Gm16589 Pseudogene Detail

Summary

• Symbol
  Gm16589
• Name
  predicted gene 16589

• Feature Type
  pseudogene
• IDs
  MGI:4418561
  NCBI Gene: 631071
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr8:4137658-4138575 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 1.92 cM

Strain
Comparison

• SNPs within 2kb
  66 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4418561	pseudogene	Chr8:4137219-4139901 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0010451	pseudogene	Chr1:182207887-182208801 (+)
AKR/J	MGP_AKRJ_G0010421	pseudogene	Chr1:187634214-187635128 (+)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0010358	pseudogene	Chr1:188423498-188424412 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014445	pseudogene	Chr8:1109321-1111706 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009501	pseudogene	Chr11:12728232-12729145 (-)
CAST/EiJ	MGP_CASTEiJ_G0010311	pseudogene	Chr11:13949947-13950861 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0013985	pseudogene	Chr8:977713-978605 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0010671	pseudogene	Chr1:187454010-187454924 (+)
PWK/PhJ	MGP_PWKPhJ_G0010080	pseudogene	Chr1:180191373-180192288 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010024	pseudogene	Chr11:13878799-13879713 (-)
WSB/EiJ	MGP_WSBEiJ_G0013561	pseudogene	Chr8:984883-1001023 (+)

Homology

• Gene Tree
  Gm16589
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000074482 (Evidence)
• NCBI Gene
  631071

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000074482	Ensembl Gene Model | MGI Sequence Detail	918	C57BL/6J
transcript	ENSMUST00000159522	Ensembl | MGI Sequence Detail	918	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm16589:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr76096	Chr8:4137559-4137570 (+)	-93 bp
Tssr76097	Chr8:4137694-4137717 (+)	48 bp
Tssr76098	Chr8:4138192-4138211 (+)	544 bp
Tssr164692	Chr8:4138400-4138422 (+)	753 bp