n-R5s41 Gene Detail

Summary

• Symbol
  n-R5s41
• Name
  nuclear encoded rRNA 5S 41

• Feature Type
  rRNA gene
  BioType Conflict
  
• IDs
  MGI:4421886
  NCBI Gene: 115488539
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:82226854-82226972 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 38.56 cM

Strain
Comparison

• SNPs within 2kb
  89 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4421886	rRNA gene	Chr15:82226854-82226972 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036595	rRNA gene	Chr15:82857288-82857406 (+)
A/J	MGP_AJ_G0036583	rRNA gene	Chr15:79917895-79918013 (+)
AKR/J	MGP_AKRJ_G0036533	rRNA gene	Chr15:82138598-82138716 (+)
BALB/cJ	MGP_BALBcJ_G0036573	rRNA gene	Chr15:79967808-79967926 (+)
C3H/HeJ	MGP_C3HHeJ_G0036264	rRNA gene	Chr15:82160955-82161073 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037085	rRNA gene	Chr15:86097013-86097131 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034179	rRNA gene	Chr15:76349477-76349595 (+)
CAST/EiJ	MGP_CASTEiJ_G0035451	rRNA gene	Chr15:82947259-82947377 (+)
CBA/J	MGP_CBAJ_G0036237	rRNA gene	Chr15:88806428-88806546 (+)
DBA/2J	MGP_DBA2J_G0036412	rRNA gene	Chr15:79385265-79385383 (+)
FVB/NJ	MGP_FVBNJ_G0036368	rRNA gene	Chr15:78456104-78456222 (+)
LP/J	MGP_LPJ_G0036459	rRNA gene	Chr15:83006247-83006365 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036365	rRNA gene	Chr15:93689220-93689338 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037200	rRNA gene	Chr15:82250308-82250426 (+)
PWK/PhJ	MGP_PWKPhJ_G0035151	rRNA gene	Chr15:79445329-79445447 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0034966	rRNA gene	Chr15:82025271-82025389 (+)
WSB/EiJ	MGP_WSBEiJ_G0035653	rRNA gene	Chr15:82671770-82671888 (+)

Homology

• Gene Tree
  n-R5s41
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  15 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving n-R5s41
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000064959 (Evidence)
• NCBI Gene
  115488539

Representative Sequences			Length	Strain/Species
genomic	115488539	NCBI Gene Model | MGI Sequence Detail	119	C57BL/6J

References

• Summaries
  All 19

  Phenotypes 15
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for n-R5s41:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132381	Chr15:82225400-82225414 (+)	-1,447 bp