D030040B21Rik Gene Detail

Summary

• Symbol
  D030040B21Rik
• Name
  RIKEN cDNA D030040B21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:4437728
  NCBI Gene: 329101
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr1:16727776-16732502 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 5.10 cM

Strain
Comparison

• SNPs within 2kb
  186 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4437728	lncRNA gene	Chr1:16727776-16732502 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004775	lincRNA gene	Chr1:14169487-14174328 (+)
A/J	MGP_AJ_G0004756	lincRNA gene	Chr1:13985115-13989850 (+)
AKR/J	MGP_AKRJ_G0004735	lincRNA gene	Chr1:14014577-14019303 (+)
BALB/cJ	MGP_BALBcJ_G0004738	lincRNA gene	Chr1:13720642-13725377 (+)
C3H/HeJ	MGP_C3HHeJ_G0004686	lincRNA gene	Chr1:14051491-14056226 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004888	lincRNA gene	Chr1:14784804-14789530 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004323	lincRNA gene	Chr1:12596838-12601261 (+)
CAST/EiJ	MGP_CASTEiJ_G0004642	lincRNA gene	Chr1:14125249-14131124 (+)
CBA/J	MGP_CBAJ_G0004679	lincRNA gene	Chr1:15139488-15144223 (+)
DBA/2J	MGP_DBA2J_G0004697	lincRNA gene	Chr1:13593822-13598556 (+)
FVB/NJ	MGP_FVBNJ_G0004717	lincRNA gene	Chr1:13382037-13386772 (+)
LP/J	MGP_LPJ_G0004776	lincRNA gene	Chr1:14377046-14381773 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004702	lincRNA gene	Chr1:15752434-15757169 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004892	lincRNA gene	Chr1:13981775-13986509 (+)
PWK/PhJ	MGP_PWKPhJ_G0004594	lincRNA gene	Chr1:13367719-13372769 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004523	lincRNA gene	Chr1:14173990-14178779 (+)
WSB/EiJ	MGP_WSBEiJ_G0004684	lincRNA gene	Chr1:13909687-13914413 (+)

Homology

• Gene Tree
  D030040B21Rik
  

Expression

• Assay Results
  708
• Tissues
  2
• cDNA Data
  5
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000097744 (Evidence)
• NCBI Gene
  329101

Representative Sequences			Length	Strain/Species
genomic	329101	NCBI Gene Model | MGI Sequence Detail	4727	C57BL/6J
transcript	NR_037998	RefSeq | MGI Sequence Detail	2788	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

References

• Summaries
  All 8

  Developmental Gene Expression 1
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for D030040B21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6002	Chr1:16727203-16727208 (+)	-570 bp
Tssr6003	Chr1:16731756-16731769 (+)	3,987 bp
Tssr6004	Chr1:16731792-16731798 (+)	4,019 bp
Tssr13	Chr1:16731832-16731839 (+)	4,060 bp