Gm16599 Gene Detail

Summary

• Symbol
  Gm16599
• Name
  predicted gene, 16599

• Feature Type
  lncRNA gene
• IDs
  MGI:4439523
  NCBI Gene: 105244801
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:136403040-136467665 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 75.97 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1207 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439523	lncRNA gene	Chr5:136303850-136467665 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004203	antisense lncRNA gene	Chr5:140923139-141068357 (+)
A/J	MGP_AJ_G0004182	antisense lncRNA gene	Chr5:134836724-134983994 (+)
AKR/J	MGP_AKRJ_G0004163	antisense lncRNA gene	Chr5:139191125-139340295 (+)
BALB/cJ	MGP_BALBcJ_G0004168	antisense lncRNA gene	Chr5:136197849-136341129 (+)
C3H/HeJ	MGP_C3HHeJ_G0004116	antisense lncRNA gene	Chr5:139816200-139961567 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004316	antisense lncRNA gene	Chr5:146147052-146299812 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003792	antisense lncRNA gene	Chr5:129118733-129264147 (+)
CAST/EiJ	MGP_CASTEiJ_G0004078	antisense lncRNA gene	Chr5:139217761-139360788 (+)
CBA/J	MGP_CBAJ_G0004110	antisense lncRNA gene	Chr5:151867796-152014894 (+)
DBA/2J	MGP_DBA2J_G0004126	antisense lncRNA gene	Chr5:134737257-134882709 (+)
FVB/NJ	MGP_FVBNJ_G0004142	antisense lncRNA gene	Chr5:133900688-134044123 (+)
LP/J	MGP_LPJ_G0004204	antisense lncRNA gene	Chr5:141335984-141483452 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004132	antisense lncRNA gene	Chr5:154829753-154976992 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004314	antisense lncRNA gene	Chr5:139016678-139161773 (+)
PWK/PhJ	MGP_PWKPhJ_G0004032	antisense lncRNA gene	Chr5:133805788-133951187 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003975	antisense lncRNA gene	Chr5:136577523-136729128 (+)
WSB/EiJ	MGP_WSBEiJ_G0004114	antisense lncRNA gene	Chr5:139755691-139898560 (+)

Homology

• Gene Tree
  Gm16599
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  3

• Ensembl
  ENSMUSG00000086220 (Evidence)
• NCBI Gene
  105244801

Representative Sequences			Length	Strain/Species
genomic	105244801	NCBI Gene Model | MGI Sequence Detail	64626	C57BL/6J
transcript	XR_868598	RefSeq | MGI Sequence Detail	22304	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;