Trbj1-4 Gene Detail

Summary

• Symbol
  Trbj1-4
• Name
  T cell receptor beta joining 1-4
• Synonyms
  Gm16643

• Feature Type
  gene segment
• IDs
  MGI:4439567
  NCBI Gene: 100125251
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:41511745-41511795 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 19.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  166 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439567	gene segment	Chr6:41511745-41511795 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002489	gene segment	Chr6:40042272-40042322 (+)
A/J	MGP_AJ_G0002463	gene segment	Chr6:38296360-38296410 (+)
AKR/J	MGP_AKRJ_G0002449	gene segment	Chr6:39534629-39534679 (+)
BALB/cJ	MGP_BALBcJ_G0002463	gene segment	Chr6:38515243-38515293 (+)
C3H/HeJ	MGP_C3HHeJ_G0002436	gene segment	Chr6:39565547-39565597 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002584	gene segment	Chr6:41056519-41056569 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002182	gene segment	Chr6:36075922-36075972 (+)
CAST/EiJ	MGP_CASTEiJ_G0002398	gene segment	Chr6:39368779-39368829 (+)
CBA/J	MGP_CBAJ_G0002427	gene segment	Chr6:42759266-42759316 (+)
DBA/2J	MGP_DBA2J_G0002438	gene segment	Chr6:38140135-38140185 (+)
FVB/NJ	MGP_FVBNJ_G0002446	gene segment	Chr6:37853411-37853461 (+)
LP/J	MGP_LPJ_G0002486	gene segment	Chr6:40051332-40051382 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002416	gene segment	Chr6:44994329-44994379 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002579	gene segment	Chr6:39511574-39511624 (+)
PWK/PhJ	MGP_PWKPhJ_G0002359	gene segment	Chr6:37746907-37746957 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002311	gene segment	Chr6:39127677-39127727 (+)
WSB/EiJ	MGP_WSBEiJ_G0002425	gene segment	Chr6:39422677-39422727 (+)

Homology

• Gene Tree
  Trbj1-4
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076486 (Evidence)
• NCBI Gene
  100125251

Representative Sequences			Length	Strain/Species
genomic	100125251	NCBI Gene Model | MGI Sequence Detail	51	C57BL/6J
polypeptide	A0A0A6YXY4	UniProt | EBI | MGI Sequence Detail	17	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 6
• Earliest
  J:7518 Gascoigne NR, et al., Genomic organization and sequence of T-cell receptor beta-chain constant- and joining-region genes. Nature. 1984 Aug 2-8;310(5976):387-91
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Trbj1-4:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55910	Chr6:41511738-41511761 (+)	5 bp