Trbj1-3 Gene Detail

Summary

• Symbol
  Trbj1-3
• Name
  T cell receptor beta joining 1-3
• Synonyms
  Gm16644

• Feature Type
  gene segment
• IDs
  MGI:4439568
  NCBI Gene: 100125250
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:41511257-41511306 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 19.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  167 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439568	gene segment	Chr6:41511257-41511306 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002488	gene segment	Chr6:40041784-40041837 (+)
A/J	MGP_AJ_G0002462	gene segment	Chr6:38295872-38295925 (+)
AKR/J	MGP_AKRJ_G0002448	gene segment	Chr6:39534141-39534194 (+)
BALB/cJ	MGP_BALBcJ_G0002462	gene segment	Chr6:38514755-38514808 (+)
C3H/HeJ	MGP_C3HHeJ_G0002435	gene segment	Chr6:39565059-39565112 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002583	gene segment	Chr6:41056031-41056084 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002181	gene segment	Chr6:36075446-36075499 (+)
CAST/EiJ	MGP_CASTEiJ_G0002397	gene segment	Chr6:39368289-39368342 (+)
CBA/J	MGP_CBAJ_G0002426	gene segment	Chr6:42758778-42758831 (+)
DBA/2J	MGP_DBA2J_G0002437	gene segment	Chr6:38139647-38139700 (+)
FVB/NJ	MGP_FVBNJ_G0002445	gene segment	Chr6:37852921-37852974 (+)
LP/J	MGP_LPJ_G0002485	gene segment	Chr6:40050844-40050897 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002415	gene segment	Chr6:44993841-44993894 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002578	gene segment	Chr6:39511086-39511139 (+)
PWK/PhJ	MGP_PWKPhJ_G0002358	gene segment	Chr6:37746419-37746472 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002310	gene segment	Chr6:39127187-39127240 (+)
WSB/EiJ	MGP_WSBEiJ_G0002424	gene segment	Chr6:39422187-39422240 (+)

Homology

• Gene Tree
  Trbj1-3
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076485 (Evidence)
• NCBI Gene
  100125250

Representative Sequences			Length	Strain/Species
genomic	100125250	NCBI Gene Model | MGI Sequence Detail	50	C57BL/6J
polypeptide	A0A0A6YXA0	UniProt | EBI | MGI Sequence Detail	17	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 6
• Earliest
  J:7518 Gascoigne NR, et al., Genomic organization and sequence of T-cell receptor beta-chain constant- and joining-region genes. Nature. 1984 Aug 2-8;310(5976):387-91
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Trbj1-3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55909	Chr6:41511249-41511272 (+)	4 bp