Traj9 Gene Detail

Summary

• Symbol
  Traj9
• Name
  T cell receptor alpha joining 9
• Synonyms
  Gm16653

• Feature Type
  gene segment
• IDs
  MGI:4439577
  NCBI Gene: 100124393
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:54446850-54446907 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  39 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439577	gene segment	Chr14:54446850-54446907 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002479	gene segment	Chr14:48137689-48137746 (+)
A/J	MGP_AJ_G0002453	gene segment	Chr14:47229640-47229697 (+)
AKR/J	MGP_AKRJ_G0002439	gene segment	Chr14:48938627-48938684 (+)
BALB/cJ	MGP_BALBcJ_G0002447	gene segment	Chr14:47198423-47198480 (+)
C3H/HeJ	MGP_C3HHeJ_G0002426	gene segment	Chr14:48619447-48619504 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002574	gene segment	Chr14:50603154-50603211 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002172	gene segment	Chr14:45642300-45642357 (+)
CAST/EiJ	MGP_CASTEiJ_G0002388	gene segment	Chr14:44851575-44851632 (+)
CBA/J	MGP_CBAJ_G0002417	gene segment	Chr14:52096833-52096890 (+)
DBA/2J	MGP_DBA2J_G0002422	gene segment	Chr14:46973805-46973862 (+)
FVB/NJ	MGP_FVBNJ_G0002436	gene segment	Chr14:46428088-46428145 (+)
LP/J	MGP_LPJ_G0002476	gene segment	Chr14:49168868-49168925 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002406	gene segment	Chr14:51538787-51538844 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002569	gene segment	Chr14:48120367-48120424 (+)
PWK/PhJ	MGP_PWKPhJ_G0002349	gene segment	Chr14:43497434-43497491 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002301	gene segment	Chr14:44097020-44097077 (+)
WSB/EiJ	MGP_WSBEiJ_G0002415	gene segment	Chr14:48412167-48412224 (+)

Homology

• Gene Tree
  Traj9
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Traj9
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076919 (Evidence)
• NCBI Gene
  100124393

Representative Sequences			Length	Strain/Species
genomic	100124393	NCBI Gene Model | MGI Sequence Detail	58	C57BL/6J
polypeptide	A0A0G2JEW3	UniProt | EBI | MGI Sequence Detail	19	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:101719 Khor B, et al., Chromosomal excision of TCRdelta chain genes is dispensable for alphabeta T cell lineage commitment. Int Immunol. 2005 Mar;17(3):225-32
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Traj9:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125592	Chr14:54445272-54445284 (+)	-1,572 bp
Tssr125593	Chr14:54445633-54445677 (+)	-1,195 bp