Traj11 Gene Detail

Summary

• Symbol
  Traj11
• Name
  T cell receptor alpha joining 11
• Synonyms
  Gm16654

• Feature Type
  gene segment
• IDs
  MGI:4439578
  NCBI Gene: 100124392
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:54444596-54444654 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  44 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439578	gene segment	Chr14:54444596-54444654 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002478	gene segment	Chr14:48135424-48135482 (+)
A/J	MGP_AJ_G0002452	gene segment	Chr14:47227375-47227433 (+)
AKR/J	MGP_AKRJ_G0002438	gene segment	Chr14:48936362-48936420 (+)
BALB/cJ	MGP_BALBcJ_G0002446	gene segment	Chr14:47196158-47196216 (+)
C3H/HeJ	MGP_C3HHeJ_G0002425	gene segment	Chr14:48617182-48617240 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002573	gene segment	Chr14:50600900-50600958 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002171	gene segment	Chr14:45640035-45640093 (+)
CAST/EiJ	MGP_CASTEiJ_G0002387	gene segment	Chr14:44849319-44849377 (+)
CBA/J	MGP_CBAJ_G0002416	gene segment	Chr14:52094568-52094626 (+)
DBA/2J	MGP_DBA2J_G0002421	gene segment	Chr14:46971536-46971594 (+)
FVB/NJ	MGP_FVBNJ_G0002435	gene segment	Chr14:46425819-46425877 (+)
LP/J	MGP_LPJ_G0002475	gene segment	Chr14:49166603-49166661 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002405	gene segment	Chr14:51536518-51536576 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002568	gene segment	Chr14:48118102-48118160 (+)
PWK/PhJ	MGP_PWKPhJ_G0002348	gene segment	Chr14:43495169-43495227 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002300	gene segment	Chr14:44094770-44094828 (+)
WSB/EiJ	MGP_WSBEiJ_G0002414	gene segment	Chr14:48409912-48409970 (+)

Homology

• Gene Tree
  Traj11
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Traj11
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076918 (Evidence)
• NCBI Gene
  100124392

Representative Sequences			Length	Strain/Species
genomic	100124392	NCBI Gene Model | MGI Sequence Detail	59	C57BL/6J
polypeptide	A0A0G2JE76	UniProt | EBI | MGI Sequence Detail	20	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:101719 Khor B, et al., Chromosomal excision of TCRdelta chain genes is dispensable for alphabeta T cell lineage commitment. Int Immunol. 2005 Mar;17(3):225-32
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Traj11:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125591	Chr14:54444556-54444565 (+)	-35 bp