Traj19 Gene Detail

Summary

• Symbol
  Traj19
• Name
  T cell receptor alpha joining 19
• Synonyms
  Gm16655

• Feature Type
  gene segment
• IDs
  MGI:4439579
  NCBI Gene: 100124370
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:54437843-54437903 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  25 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439579	gene segment	Chr14:54437843-54437903 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002471	gene segment	Chr14:48128659-48128719 (+)
A/J	MGP_AJ_G0002445	gene segment	Chr14:47220608-47220668 (+)
AKR/J	MGP_AKRJ_G0002431	gene segment	Chr14:48929599-48929659 (+)
BALB/cJ	MGP_BALBcJ_G0002439	gene segment	Chr14:47189390-47189450 (+)
C3H/HeJ	MGP_C3HHeJ_G0002418	gene segment	Chr14:48610331-48610391 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002566	gene segment	Chr14:50594146-50594206 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002164	gene segment	Chr14:45633231-45633291 (+)
CAST/EiJ	MGP_CASTEiJ_G0002380	gene segment	Chr14:44842550-44842610 (+)
CBA/J	MGP_CBAJ_G0002409	gene segment	Chr14:52087801-52087861 (+)
DBA/2J	MGP_DBA2J_G0002414	gene segment	Chr14:46964771-46964831 (+)
FVB/NJ	MGP_FVBNJ_G0002428	gene segment	Chr14:46419057-46419117 (+)
LP/J	MGP_LPJ_G0002468	gene segment	Chr14:49158305-49158365 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002398	gene segment	Chr14:51529750-51529810 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002561	gene segment	Chr14:48111333-48111393 (+)
PWK/PhJ	MGP_PWKPhJ_G0002341	gene segment	Chr14:43488360-43488420 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002293	gene segment	Chr14:44088249-44088309 (+)
WSB/EiJ	MGP_WSBEiJ_G0002407	gene segment	Chr14:48403155-48403215 (+)

Homology

• Gene Tree
  Traj19
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Traj19
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076910 (Evidence)
• NCBI Gene
  100124370

Representative Sequences			Length	Strain/Species
genomic	100124370	NCBI Gene Model | MGI Sequence Detail	61	C57BL/6J
polypeptide	A0A0G2JDX6	UniProt | EBI | MGI Sequence Detail	20	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:101719 Khor B, et al., Chromosomal excision of TCRdelta chain genes is dispensable for alphabeta T cell lineage commitment. Int Immunol. 2005 Mar;17(3):225-32
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Traj19:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125590	Chr14:54437429-54437440 (+)	-408 bp