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Traj39 Gene Detail
Summary
  • Symbol
    Traj39
  • Name
    T cell receptor alpha joining 39
  • Synonyms
    Gm16669
  • Feature Type
    gene segment
  • IDs
    MGI:4439593
    NCBI Gene: 100124349
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:54417419-54417481 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.68 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    44 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4439593
 gene segment Chr14:54417419-54417481 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002452
 gene segment Chr14:48108364-48108426 (+)
A/J MGP_AJ_G0002426
 gene segment Chr14:47200253-47200315 (+)
AKR/J MGP_AKRJ_G0002412
 gene segment Chr14:48907678-48907740 (+)
BALB/cJ MGP_BALBcJ_G0002420
 gene segment Chr14:47168675-47168737 (+)
C3H/HeJ MGP_C3HHeJ_G0002399
 gene segment Chr14:48589754-48589816 (+)
C57BL/6NJ MGP_C57BL6NJ_G0002547
 gene segment Chr14:50573823-50573885 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002146
 gene segment Chr14:45613033-45613095 (+)
CAST/EiJ MGP_CASTEiJ_G0002361
 gene segment Chr14:44821450-44821512 (+)
CBA/J MGP_CBAJ_G0002390
 gene segment Chr14:52064449-52064511 (+)
DBA/2J MGP_DBA2J_G0002395
 gene segment Chr14:46944000-46944062 (+)
FVB/NJ MGP_FVBNJ_G0002409
 gene segment Chr14:46398755-46398817 (+)
LP/J MGP_LPJ_G0002449
 gene segment Chr14:49133407-49133469 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002379
 gene segment Chr14:51508593-51508655 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002542
 gene segment Chr14:48091025-48091087 (+)
PWK/PhJ MGP_PWKPhJ_G0002322
 gene segment Chr14:43467494-43467556 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002274
 gene segment Chr14:44066572-44066634 (+)
WSB/EiJ MGP_WSBEiJ_G0002388
 gene segment Chr14:48380927-48380989 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100124349 NCBI Gene Model | MGI Sequence Detail 63 C57BL/6J ±  kb
polypeptide A0A0G2JDX5 UniProt | EBI | MGI Sequence Detail 21 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
References
more
  • Summaries
    All 6
    Phenotypes 1
  • Earliest
    J:101719 Khor B, et al., Chromosomal excision of TCRdelta chain genes is dispensable for alphabeta T cell lineage commitment. Int Immunol. 2005 Mar;17(3):225-32
  • Latest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory