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Igkv12-38 Gene Detail
Summary
  • Symbol
    Igkv12-38
  • Name
    immunoglobulin kappa chain variable 12-38
  • Synonyms
    Gm16690
  • Feature Type
    gene segment
  • IDs
    MGI:4439614
    NCBI Gene: 620050
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:69920170-69920632 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 31.69 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    117 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4439614
 gene segment Chr6:69920170-69920632 (-)
129S1/SvImJ MGP_129S1SvImJ_G0000159
 gene segment Chr6:70293095-70293557 (-)
A/J MGP_AJ_G0000141
 gene segment Chr6:67500091-67500553 (-)
AKR/J MGP_AKRJ_G0000140
 gene segment Chr6:69465147-69465609 (-)
BALB/cJ MGP_BALBcJ_G0000134
 gene segment Chr6:67651173-67651635 (-)
C3H/HeJ MGP_C3HHeJ_G0000115
 gene segment Chr6:114761606-114762068 (+)
C57BL/6NJ MGP_C57BL6NJ_G0000198
 gene segment Chr6:72059998-72060460 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0000069
 gene segment Chr6:65675156-65675626 (-)
CAST/EiJ MGP_CASTEiJ_G0000146
 gene segment Chr6:69417474-69417936 (-)
CBA/J MGP_CBAJ_G0000140
 gene segment Chr6:74927628-74928090 (-)
DBA/2J MGP_DBA2J_G0000134
 gene segment Chr6:66945616-66946078 (-)
FVB/NJ MGP_FVBNJ_G0000132
 gene segment Chr6:66376419-66376881 (-)
LP/J MGP_LPJ_G0000163
 gene segment Chr6:70146198-70146660 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0000144
 gene segment Chr6:78605133-78605595 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0000180
 gene segment Chr6:69402558-69403020 (-)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0000099
 gene segment Chr6:68266818-68267280 (-)
WSB/EiJ MGP_WSBEiJ_G0000139
 gene segment Chr6:69685033-69685495 (-)



Homology
more
  • Human Ortholog
    IGKV1-13, immunoglobulin kappa variable 1-13
  • Vertebrate Orthologs
    10
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    IGKV1-13, immunoglobulin kappa variable 1-13
  • Synonyms
    IGKV113, L18
  • Links
    NCBI Gene ID: 28939
    UniProt: P0DP09

  • Chr Location
    2p11.2; chr2:89045990-89046466 (-)  GRCh38
  • Human Ortholog
    IGKV1-27, immunoglobulin kappa variable 1-27
  • Synonyms
    A20, IGKV127
  • Links
    NCBI Gene ID: 28935
    UniProt: A0A075B6S5

  • Chr Location
    2p11.2; chr2:89213423-89213928 (-)  GRCh38
  • Human Ortholog
    IGKV1-33, immunoglobulin kappa variable 1-33
  • Synonyms
    IGKV133, O18
  • Links
    NCBI Gene ID: 28933

  • Chr Location
    2p11.2; chr2:89268001-89268506 (-)  GRCh38
  • Human Ortholog
    IGKV1-39, immunoglobulin kappa variable 1-39
  • Synonyms
    IGKV139, O12, O12a
  • Links
    NCBI Gene ID: 28930
    UniProt: P01597

  • Chr Location
    2p11.2; chr2:89319625-89320146 (-)  GRCh38
  • Human Ortholog
    IGKV1-8, immunoglobulin kappa variable 1-8
  • Synonyms
    IGKV18, L9
  • Links
    NCBI Gene ID: 28942
    UniProt: A0A0C4DH67

  • Chr Location
    2p11.2; chr2:88992409-88992931 (-)  GRCh38
  • Human Ortholog
    IGKV1D-13, immunoglobulin kappa variable 1D-13
  • Synonyms
    IGKV1D13, L18
  • Links
    NCBI Gene ID: 28902
    UniProt: A0A0B4J2D9

  • Chr Location
    2p11.2; chr2:90154073-90154574 (+)  GRCh38
  • Human Ortholog
    IGKV1D-33, immunoglobulin kappa variable 1D-33
  • Synonyms
    IGKV1D33, O8
  • Links
    NCBI Gene ID: 28896
    UniProt: P01593

  • Chr Location
    2p11.2; chr2:89913982-89914545 (+)  GRCh38
  • Human Ortholog
    IGKV1D-43, immunoglobulin kappa variable 1D-43
  • Synonyms
    IGKV1D43, L23, L23a
  • Links
    NCBI Gene ID: 28891
    UniProt: A0A0B4J1Z2

  • Chr Location
    2p11.2; chr2:90209873-90210529 (+)  GRCh38
  • Human Ortholog
    IGKV1D-8, immunoglobulin kappa variable 1D-8
  • Synonyms
    IGKV1D8, L24, L24a
  • Links
    NCBI Gene ID: 28904
    UniProt: A0A087WSZ0

  • Chr Location
    2p11.2; chr2:90220727-90221384 (+)  GRCh38
  • Human Ortholog
    IGKV1OR2-108, immunoglobulin kappa variable 1/OR2-108 (non-functional)
  • Synonyms
    IGKV1OR2108, IGO1
  • Links
    NCBI Gene ID: 28862

  • Chr Location
    2q12-q14; chr2:113406396-113406872 (+)  GRCh38
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 620050 NCBI Gene Model | MGI Sequence Detail 463 C57BL/6J ±  kb
polypeptide A0A0G2JEI7 UniProt | EBI | MGI Sequence Detail 115 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR003599 Immunoglobulin subtype
    IPR050150 Immunoglobulin Variable Light Chain
    IPR013106 Immunoglobulin V-set domain
References
more
  • Summaries
    All 5
  • Earliest
    J:164271 Arnhold J, et al., Human myeloperoxidase in innate and acquired immunity. Arch Biochem Biophys. 2010 Aug 1;500(1):92-106
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory