Gm16740 Gene Detail

Summary

• Symbol
  Gm16740
• Name
  predicted gene, 16740

• Feature Type
  lncRNA gene
• IDs
  MGI:4439664
  NCBI Gene: 100504029
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr3:95124768-95133969 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 40.74 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  240 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439664	lncRNA gene	Chr3:95124732-95133969 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003788	antisense lncRNA gene	Chr3:95923804-95933038 (+)
A/J	MGP_AJ_G0003768	antisense lncRNA gene	Chr3:92959346-92968674 (+)
AKR/J	MGP_AKRJ_G0003745	antisense lncRNA gene	Chr3:95104997-95114774 (+)
BALB/cJ	MGP_BALBcJ_G0003757	antisense lncRNA gene	Chr3:92735587-92746454 (+)
C3H/HeJ	MGP_C3HHeJ_G0003703	antisense lncRNA gene	Chr3:95391544-95400793 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003898	antisense lncRNA gene	Chr3:99491321-99500522 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003402	antisense lncRNA gene	Chr3:89321148-89330231 (+)
CAST/EiJ	MGP_CASTEiJ_G0003667	antisense lncRNA gene	Chr3:94670151-94681382 (+)
CBA/J	MGP_CBAJ_G0003699	antisense lncRNA gene	Chr3:103097238-103106447 (+)
DBA/2J	MGP_DBA2J_G0003709	antisense lncRNA gene	Chr3:92251040-92260242 (+)
FVB/NJ	MGP_FVBNJ_G0003730	antisense lncRNA gene	Chr3:90323743-90332945 (+)
LP/J	MGP_LPJ_G0003789	antisense lncRNA gene	Chr3:97228704-97237894 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003717	antisense lncRNA gene	Chr3:109214516-109225161 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003898	antisense lncRNA gene	Chr3:94761789-94771162 (+)
PWK/PhJ	MGP_PWKPhJ_G0003623	antisense lncRNA gene	Chr3:92129082-92138442 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003566	antisense lncRNA gene	Chr3:93056331-93065389 (+)
WSB/EiJ	MGP_WSBEiJ_G0003703	antisense lncRNA gene	Chr3:95145719-95155835 (+)

Homology

• Gene Tree
  Gm16740
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  63
• Chemically induced (other)
  1
• Gene trapped
  61
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm16740
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000097167 (Evidence)
• NCBI Gene
  100504029

Representative Sequences			Length	Strain/Species
genomic	100504029	NCBI Gene Model | MGI Sequence Detail	9202	C57BL/6J
transcript	NR_108026	RefSeq | MGI Sequence Detail	956	ZRU/MplStud

References

• Summaries
  All 13

  Diseases 1

  Phenotypes 10
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm16740:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30503	Chr3:95124728-95124795 (+)	-6 bp
Tssr30504	Chr3:95125311-95125370 (+)	573 bp
Tssr30505	Chr3:95125381-95125393 (+)	619 bp