Gm16759 Gene Detail

Summary

• Symbol
  Gm16759
• Name
  predicted gene, 16759
• Synonyms
  lnc-Smad3

• Feature Type
  lncRNA gene
• IDs
  MGI:4439683
  NCBI Gene: 102639582
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:63306646-63441286 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 34.07 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2610 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439683	lncRNA gene	Chr9:63305883-63475973 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015740	unclassified non-coding RNA gene	Chr9:62992559-63174939 (+)
A/J	MGP_AJ_G0015717	unclassified non-coding RNA gene	Chr9:60905867-61074660 (+)
AKR/J	MGP_AKRJ_G0015681	unclassified non-coding RNA gene	Chr9:62321847-62493737 (+)
BALB/cJ	MGP_BALBcJ_G0015678	unclassified non-coding RNA gene	Chr9:60632798-60803708 (+)
C3H/HeJ	MGP_C3HHeJ_G0015500	unclassified non-coding RNA gene	Chr9:62837111-63011701 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016134	unclassified non-coding RNA gene	Chr9:64724137-64896960 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013860	unclassified non-coding RNA gene	Chr9:60565661-60734049 (+)
CAST/EiJ	MGP_CASTEiJ_G0015055	unclassified non-coding RNA gene	Chr9:62985949-63163512 (+)
CBA/J	MGP_CBAJ_G0015480	unclassified non-coding RNA gene	Chr9:66951407-67137862 (+)
DBA/2J	MGP_DBA2J_G0015578	unclassified non-coding RNA gene	Chr9:60694105-60862030 (+)
FVB/NJ	MGP_FVBNJ_G0015583	unclassified non-coding RNA gene	Chr9:59991280-60159426 (+)
LP/J	MGP_LPJ_G0015658	unclassified non-coding RNA gene	Chr9:63276534-63453321 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015606	unclassified non-coding RNA gene	Chr9:68270293-68459758 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016176	unclassified non-coding RNA gene	Chr9:62408809-62587319 (+)
PWK/PhJ	MGP_PWKPhJ_G0014836	unclassified non-coding RNA gene	Chr9:60833218-61004022 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014624	unclassified non-coding RNA gene	Chr9:62683942-62858639 (+)
WSB/EiJ	MGP_WSBEiJ_G0015159	unclassified non-coding RNA gene	Chr9:62313490-62487490 (+)

Homology

• Gene Tree
  Gm16759
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm16759
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  4

• Ensembl
  ENSMUSG00000086539 (Evidence)
• NCBI Gene
  102639582

Representative Sequences			Length	Strain/Species
genomic	102639582	NCBI Gene Model | MGI Sequence Detail	134641	C57BL/6J
transcript	AK039256	GenBank | ENA | DDBJ | MGI Sequence Detail	1386	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:345539 Xia M, et al., Ash1l and lnc-Smad3 coordinate Smad3 locus accessibility to modulate iTreg polarization and T cell autoimmunity. Nat Commun. 2017 Jun 09;8:15818

TSS for Gm16759:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr2906	Chr9:63408007-63408011 (+)	101,363 bp