Gm16845 Gene Detail

Summary

• Symbol
  Gm16845
• Name
  predicted gene, 16845

• Feature Type
  lncRNA gene
• IDs
  MGI:4439769
  NCBI Gene: 100503652
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:21982298-21997418 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 8.23 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  451 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439769	lncRNA gene	Chr9:21982298-21997427 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007409	lincRNA gene	Chr9:19357917-19374210 (+)
A/J	MGP_AJ_G0007405	lincRNA gene	Chr9:18974897-18990599 (+)
AKR/J	MGP_AKRJ_G0007377	lincRNA gene	Chr9:19340693-19355720 (+)
BALB/cJ	MGP_BALBcJ_G0007383	lincRNA gene	Chr9:18856903-18872107 (+)
C3H/HeJ	MGP_C3HHeJ_G0007327	lincRNA gene	Chr9:19649578-19667128 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007554	lincRNA gene	Chr9:20129220-20145301 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006745	lincRNA gene	Chr9:18075873-18090802 (+)
CAST/EiJ	MGP_CASTEiJ_G0007230	lincRNA gene	Chr9:19485060-19502320 (+)
CBA/J	MGP_CBAJ_G0007309	lincRNA gene	Chr9:20907002-20927547 (+)
DBA/2J	MGP_DBA2J_G0007332	lincRNA gene	Chr9:18939390-18954628 (+)
FVB/NJ	MGP_FVBNJ_G0007353	lincRNA gene	Chr9:18490818-18506229 (+)
LP/J	MGP_LPJ_G0007414	lincRNA gene	Chr9:19515852-19532736 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007330	lincRNA gene	Chr9:22454496-22469465 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007557	lincRNA gene	Chr9:19308969-19324043 (+)
PWK/PhJ	MGP_PWKPhJ_G0007171	lincRNA gene	Chr9:18946543-18961892 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007078	lincRNA gene	Chr9:19341245-19356269 (+)
WSB/EiJ	MGP_WSBEiJ_G0007290	lincRNA gene	Chr9:19048148-19064732 (+)

Homology

• Gene Tree
  Gm16845
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  10

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2

• Ensembl
  ENSMUSG00000096981 (Evidence)
• NCBI Gene
  100503652

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000096981	Ensembl Gene Model | MGI Sequence Detail	15121	C57BL/6J
transcript	ENSMUST00000180419	Ensembl | MGI Sequence Detail	1415	Not Applicable

Molecular
Reagents

• All nucleic 10

  cDNA 10

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm16845:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr84068	Chr9:21982298-21982347 (+)	25 bp