Gm16853 Gene Detail

Summary

• Symbol
  Gm16853
• Name
  predicted gene, 16853

• Feature Type
  lncRNA gene
• IDs
  MGI:4439777
  NCBI Gene: 330902
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:21316538-21323016 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 7.79 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  255 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439777	lncRNA gene	Chr9:21316538-21323016 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0007407	lincRNA gene	Chr9:18618434-18624912 (-)
A/J	MGP_AJ_G0007403	lincRNA gene	Chr9:18295864-18302386 (-)
AKR/J	MGP_AKRJ_G0007375	lincRNA gene	Chr9:18637597-18644075 (-)
BALB/cJ	MGP_BALBcJ_G0007381	lincRNA gene	Chr9:18184744-18191222 (-)
C3H/HeJ	MGP_C3HHeJ_G0007325	lincRNA gene	Chr9:18942846-18949328 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007552	lincRNA gene	Chr9:19373176-19379654 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006744	lincRNA gene	Chr9:17420264-17426748 (-)
CAST/EiJ	MGP_CASTEiJ_G0007228	lincRNA gene	Chr9:18766487-18772987 (-)
CBA/J	MGP_CBAJ_G0007307	lincRNA gene	Chr9:20099972-20106450 (-)
DBA/2J	MGP_DBA2J_G0007330	lincRNA gene	Chr9:18269769-18276305 (-)
FVB/NJ	MGP_FVBNJ_G0007351	lincRNA gene	Chr9:17798138-17804623 (-)
LP/J	MGP_LPJ_G0007412	lincRNA gene	Chr9:18778400-18784885 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007328	lincRNA gene	Chr9:21683339-21689824 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007555	lincRNA gene	Chr9:18596043-18602521 (-)
PWK/PhJ	MGP_PWKPhJ_G0007169	lincRNA gene	Chr9:18257864-18264233 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0007076	lincRNA gene	Chr9:18645409-18651765 (-)
WSB/EiJ	MGP_WSBEiJ_G0007288	lincRNA gene	Chr9:18312690-18319175 (-)

Homology

• Gene Tree
  Gm16853
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000097665 (Evidence)
• NCBI Gene
  330902

Representative Sequences			Length	Strain/Species
genomic	330902	NCBI Gene Model | MGI Sequence Detail	6479	C57BL/6J
transcript	NR_045742	RefSeq | MGI Sequence Detail	1986	C57BL/6

Molecular
Reagents

• All nucleic 4

  Genomic 1

  cDNA 3

References

• Summaries
  All 7

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm16853:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr88400	Chr9:21323537-21323542 (-)	-524 bp