Gm16894 Gene Detail

Summary

• Symbol
  Gm16894
• Name
  predicted gene, 16894

• Feature Type
  lncRNA gene
• IDs
  MGI:4439818
  NCBI Gene: 100047133
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:40115388-40125011 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 18.64 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  402 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439818	lncRNA gene	Chr1:40115372-40125011 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0002671	antisense lncRNA gene	Chr1:38859677-38869237 (-)
A/J	MGP_AJ_G0002647	antisense lncRNA gene	Chr1:37757654-37767288 (-)
AKR/J	MGP_AKRJ_G0002627	antisense lncRNA gene	Chr1:38249738-38260666 (-)
BALB/cJ	MGP_BALBcJ_G0002633	antisense lncRNA gene	Chr1:37419264-37429340 (-)
C3H/HeJ	MGP_C3HHeJ_G0002593	antisense lncRNA gene	Chr1:38538561-38548751 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0002777	antisense lncRNA gene	Chr1:40452518-40464405 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002324	antisense lncRNA gene	Chr1:34704312-34713696 (-)
CAST/EiJ	MGP_CASTEiJ_G0002566	antisense lncRNA gene	Chr1:38445911-38457179 (-)
CBA/J	MGP_CBAJ_G0002588	antisense lncRNA gene	Chr1:41636274-41649255 (-)
DBA/2J	MGP_DBA2J_G0002593	antisense lncRNA gene	Chr1:37045965-37055830 (-)
FVB/NJ	MGP_FVBNJ_G0002613	antisense lncRNA gene	Chr1:36590266-36599505 (-)
LP/J	MGP_LPJ_G0002673	antisense lncRNA gene	Chr1:39193955-39204240 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002604	antisense lncRNA gene	Chr1:43667343-43677853 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002782	antisense lncRNA gene	Chr1:38398792-38409433 (-)
PWK/PhJ	MGP_PWKPhJ_G0002523	antisense lncRNA gene	Chr1:36869928-36879707 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0002477	antisense lncRNA gene	Chr1:38341450-38350712 (-)
WSB/EiJ	MGP_WSBEiJ_G0002595	antisense lncRNA gene	Chr1:38355232-38366086 (-)

Homology

• Gene Tree
  Gm16894
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm16894
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000097899 (Evidence)
• NCBI Gene
  100047133

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097899	Ensembl Gene Model | MGI Sequence Detail	9624	C57BL/6J
transcript	ENSMUST00000181756	Ensembl | MGI Sequence Detail	842	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm16894:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11414	Chr1:40124983-40125022 (-)	8 bp