Traj7 Gene Detail

Summary

• Symbol
  Traj7
• Name
  T cell receptor alpha joining 7
• Synonyms
  Gm16919

• Feature Type
  gene segment
• IDs
  MGI:4439843
  NCBI Gene: 100124396
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:54448927-54448985 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  41 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439843	gene segment	Chr14:54448927-54448985 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002480	gene segment	Chr14:48139774-48139832 (+)
A/J	MGP_AJ_G0002454	gene segment	Chr14:47231725-47231783 (+)
AKR/J	MGP_AKRJ_G0002440	gene segment	Chr14:48940712-48940770 (+)
BALB/cJ	MGP_BALBcJ_G0002448	gene segment	Chr14:47200508-47200566 (+)
C3H/HeJ	MGP_C3HHeJ_G0002427	gene segment	Chr14:48621643-48621701 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002575	gene segment	Chr14:50605231-50605289 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002173	gene segment	Chr14:45644444-45644502 (+)
CAST/EiJ	MGP_CASTEiJ_G0002389	gene segment	Chr14:44853660-44853718 (+)
CBA/J	MGP_CBAJ_G0002418	gene segment	Chr14:52098918-52098976 (+)
DBA/2J	MGP_DBA2J_G0002423	gene segment	Chr14:46975890-46975948 (+)
FVB/NJ	MGP_FVBNJ_G0002437	gene segment	Chr14:46430193-46430251 (+)
LP/J	MGP_LPJ_G0002477	gene segment	Chr14:49170953-49171011 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002407	gene segment	Chr14:51540857-51540915 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002570	gene segment	Chr14:48122452-48122510 (+)
PWK/PhJ	MGP_PWKPhJ_G0002350	gene segment	Chr14:43499519-43499577 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002302	gene segment	Chr14:44099150-44099208 (+)
WSB/EiJ	MGP_WSBEiJ_G0002416	gene segment	Chr14:48414234-48414292 (+)

Homology

• Gene Tree
  Traj7
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Traj7
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076921 (Evidence)
• NCBI Gene
  100124396

Representative Sequences			Length	Strain/Species
genomic	100124396	NCBI Gene Model | MGI Sequence Detail	59	C57BL/6J
polypeptide	A0A0G2JFF4	UniProt | EBI | MGI Sequence Detail	20	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:101719 Khor B, et al., Chromosomal excision of TCRdelta chain genes is dispensable for alphabeta T cell lineage commitment. Int Immunol. 2005 Mar;17(3):225-32
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Traj7:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125594	Chr14:54448848-54448861 (+)	-72 bp
Tssr125595	Chr14:54448905-54448923 (+)	-13 bp