Gm16938 Gene Detail

Summary

• Symbol
  Gm16938
• Name
  predicted gene, 16938

• Feature Type
  lncRNA gene
• IDs
  MGI:4439862
  NCBI Gene: 330599
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:97826401-97828608 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 53.62 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  153 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439862	lncRNA gene	Chr7:97826401-97834011 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015681	unclassified non-coding RNA gene	Chr7:100905223-100907415 (+)
A/J	MGP_AJ_G0015660	unclassified non-coding RNA gene	Chr7:98411024-98413233 (+)
AKR/J	MGP_AKRJ_G0015623	unclassified non-coding RNA gene	Chr7:100752585-100754792 (+)
BALB/cJ	MGP_BALBcJ_G0015621	unclassified non-coding RNA gene	Chr7:98102040-98104196 (+)
C3H/HeJ	MGP_C3HHeJ_G0015443	unclassified non-coding RNA gene	Chr7:101109104-101111293 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016075	unclassified non-coding RNA gene	Chr7:104818680-104820904 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013805	unclassified non-coding RNA gene	Chr7:100864714-100866886 (+)
CAST/EiJ	MGP_CASTEiJ_G0014997	unclassified non-coding RNA gene	Chr7:92623863-92627404 (+)
CBA/J	MGP_CBAJ_G0015424	unclassified non-coding RNA gene	Chr7:108376570-108378779 (+)
DBA/2J	MGP_DBA2J_G0015519	unclassified non-coding RNA gene	Chr7:96748316-96750505 (+)
FVB/NJ	MGP_FVBNJ_G0015526	unclassified non-coding RNA gene	Chr7:96553288-96555499 (+)
LP/J	MGP_LPJ_G0015599	unclassified non-coding RNA gene	Chr7:102226269-102228501 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015548	unclassified non-coding RNA gene	Chr7:109911905-109914110 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016117	unclassified non-coding RNA gene	Chr7:100026094-100028193 (+)
PWK/PhJ	MGP_PWKPhJ_G0014780	unclassified non-coding RNA gene	Chr7:89818954-89821157 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014569	unclassified non-coding RNA gene	Chr7:87291363-87293575 (+)
WSB/EiJ	MGP_WSBEiJ_G0015103	unclassified non-coding RNA gene	Chr7:100671026-100674858 (+)

Homology

• Gene Tree
  Gm16938
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm16938
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  4

• Ensembl
  ENSMUSG00000097749 (Evidence)
• NCBI Gene
  330599

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097749	Ensembl Gene Model | MGI Sequence Detail	2208	C57BL/6J
transcript	ENSMUST00000180517	Ensembl | MGI Sequence Detail	464	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 15

  Phenotypes 10
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for Gm16938:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68010	Chr7:97827538-97827630 (+)	1,183 bp