Trav4-3 Gene Detail

Summary

• Symbol
  Trav4-3
• Name
  T cell receptor alpha variable 4-3
• Synonyms
  Gm17002

• Feature Type
  gene segment
• IDs
  MGI:4440478
  NCBI Gene: 100126471
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:53836368-53836867 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.43 cM

Strain
Comparison

• SNPs within 2kb
  216 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4440478	gene segment	Chr14:53836285-53836867 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002560	gene segment	Chr14:47483636-47484322 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0002650	gene segment	Chr14:49923487-49924040 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0002455	gene segment	Chr14:44210604-44211134 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0002557	gene segment	Chr14:48448364-48460483 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0002651	gene segment	Chr14:47032217-47032798 (+)
PWK/PhJ	MGP_PWKPhJ_G0002428	gene segment	Chr14:42874217-42874746 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002375	gene segment	Chr14:43223574-43224105 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Trav4-3
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000093966 (Evidence)
• NCBI Gene
  100126471

Representative Sequences			Length	Strain/Species
genomic	100126471	NCBI Gene Model | MGI Sequence Detail	500	C57BL/6J
polypeptide	A0A0B4J1K1	UniProt | EBI | MGI Sequence Detail	110	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR007110 Immunoglobulin-like domain
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR013106 Immunoglobulin V-set domain
  IPR051896 T cell receptor alpha variable region

References

• Summaries
  All 5
• Earliest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Trav4-3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125488	Chr14:53836282-53836312 (+)	-71 bp