Cahm Gene Detail

Summary

• Symbol
  Cahm
• Name
  colon adenocarcinoma hypermethylated RNA
• Synonyms
  B930003M22Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:4462384
  NCBI Gene: 100526796
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:10538848-10540070 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic

Strain
Comparison

• SNPs within 2kb
  64 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4462384	lncRNA gene	Chr17:10538848-10540070 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  98 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  2
• Spontaneous
  1
• Genomic Mutations
  1 involving Cahm
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  2

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  1

• NCBI Gene
  100526796

Representative Sequences			Length	Strain/Species
genomic	100526796	NCBI Gene Model | MGI Sequence Detail	1223	C57BL/6J
transcript	NR_037588	RefSeq | MGI Sequence Detail	1223	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 104

  Phenotypes 98
• Earliest
  J:13141 SIDMAN RL, et al., MUTANT MICE (QUAKING AND JIMPY) WITH DEFICIENT MYELINATION IN THE CENTRAL NERVOUS SYSTEM. Science. 1964 Apr 17;144:309-11
• Latest
  J:312601 Ogorek M, et al., Atp7a and Atp7b regulate copper homeostasis in developing male germ cells in mice. Metallomics. 2017 Sep 20;9(9):1288-1303

TSS for Cahm:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr142570	Chr17:10537249-10537266 (+)	-1,590 bp
Tssr142571	Chr17:10538823-10538861 (+)	-6 bp