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Trim30b Gene Detail
Summary
  • Symbol
    Trim30b
  • Name
    tripartite motif-containing 30B
  • Synonyms
    A530023O14Rik, Trim30-1
  • Feature Type
    protein coding gene
  • IDs
    MGI:4821256
    NCBI Gene: 244183
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr7:104004605-104007853 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 55.69 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    370 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4821256
 protein coding gene Chr7:104004589-104019091 (-)
129S1/SvImJ MGP_129S1SvImJ_G0032714
 protein coding gene Chr7:107506671-107523532 (-)
A/J MGP_AJ_G0032689
 protein coding gene Chr7:104691838-104707451 (-)
AKR/J MGP_AKRJ_G0032622
 protein coding gene Chr7:107315336-107330203 (-)
BALB/cJ MGP_BALBcJ_G0032699
 protein coding gene Chr7:104424397-104439258 (-)
C3H/HeJ MGP_C3HHeJ_G0032410
 protein coding gene Chr7:107571750-107586641 (-)
C57BL/6NJ MGP_C57BL6NJ_G0033195
 protein coding gene Chr7:111691213-111711327 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0030189
 protein coding gene Chr7:106782630-106797226 (-)
CAST/EiJ MGP_CASTEiJ_G0031737
 protein coding gene Chr7:99254663-99315399 (-)
CBA/J MGP_CBAJ_G0032378
 protein coding gene Chr7:115482069-115497286 (-)
DBA/2J MGP_DBA2J_G0032532
 protein coding gene Chr7:103026011-103040922 (-)
FVB/NJ MGP_FVBNJ_G0032485
 protein coding gene Chr7:102736060-102751500 (-)
LP/J MGP_LPJ_G0032625
 protein coding gene Chr7:108835476-108852069 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0032517
 protein coding gene Chr7:116962169-116976441 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0033222
 protein coding gene Chr7:106503484-106518436 (-)
PWK/PhJ MGP_PWKPhJ_G0031453
 protein coding gene Chr7:96027601-96042226 (-)
SPRET/EiJ MGP_SPRETEiJ_G0031298
 protein coding gene Chr7:93646868-93662796 (-)
WSB/EiJ MGP_WSBEiJ_G0031854
 protein coding gene Chr7:107165670-107182415 (-)



Homology
more
  • Human Ortholog
    TRIM5, tripartite motif containing 5
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRIM5, tripartite motif containing 5
  • Synonyms
    RNF88, TRIM5alpha
  • Links
    NCBI Gene ID: 85363
    neXtProt AC: NX_Q9C035
    UniProt: Q9C035

  • Chr Location
    11p15.4; chr11:5588635-5938619 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    15 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    31
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    734
  • Tissues
    18
  • cDNA Data
    20
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 244183 NCBI Gene Model | MGI Sequence Detail 3249 C57BL/6J ±  kb
    transcript NM_175648 RefSeq | MGI Sequence Detail 2771 C57BL/6  
    polypeptide NP_783579 RefSeq | MGI Sequence Detail 159 C57BL/6  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      4 Sequences
    • InterPro Domains
      IPR043136 B30.2/SPRY domain superfamily
      IPR000315 B-box-type zinc finger
      IPR013320 Concanavalin A-like lectin/glucanase domain superfamily
      IPR050143 Tripartite motif-containing
      IPR013083 Zinc finger, RING/FYVE/PHD-type
      IPR001841 Zinc finger, RING-type
      IPR017907 Zinc finger, RING-type, conserved site
      IPR027370 Zinc finger, RING-type, eukaryotic
    Molecular
    Reagents
    less
    • All nucleic 20
      cDNA 20

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:2443916
    References
    more
    • Summaries
      All 39
      Developmental Gene Expression 2
      Gene Ontology 2
      Phenotypes 15
    • Earliest
      J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
    • Latest
      J:349812 Schafer A, et al., Mapping of susceptibility loci for Ebola virus pathogenesis in mice. Cell Rep. 2024 May 28;43(5):114127
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory