Gm17249 Gene Detail

Summary

• Symbol
  Gm17249
• Name
  predicted gene, 17249

• Feature Type
  lncRNA gene
• IDs
  MGI:4936883
  NCBI Gene: 102637873
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr10:84456387-84458506 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 41.58 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  165 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4936883	lncRNA gene	Chr10:84454205-84458506 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0005139	lincRNA gene	Chr10:85492569-85495815 (-)
A/J	MGP_AJ_G0005122	lincRNA gene	Chr10:82593677-82596984 (-)
AKR/J	MGP_AKRJ_G0005100	lincRNA gene	Chr10:84888827-84892079 (-)
BALB/cJ	MGP_BALBcJ_G0005103	lincRNA gene	Chr10:82842848-82846100 (-)
C3H/HeJ	MGP_C3HHeJ_G0005052	lincRNA gene	Chr10:84973317-84976569 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0005253	lincRNA gene	Chr10:88388142-88395114 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004659	lincRNA gene	Chr10:78416455-78419594 (-)
CAST/EiJ	MGP_CASTEiJ_G0004999	lincRNA gene	Chr10:84828328-84831578 (-)
CBA/J	MGP_CBAJ_G0005042	lincRNA gene	Chr10:92102240-92105492 (-)
DBA/2J	MGP_DBA2J_G0005061	lincRNA gene	Chr10:81736275-81739527 (-)
FVB/NJ	MGP_FVBNJ_G0005083	lincRNA gene	Chr10:80971159-80974411 (-)
LP/J	MGP_LPJ_G0005140	lincRNA gene	Chr10:86133220-86136472 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005066	lincRNA gene	Chr10:93698452-93701704 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0004950	lincRNA gene	Chr10:81596712-81600041 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004875	lincRNA gene	Chr10:83437297-83440440 (-)
WSB/EiJ	MGP_WSBEiJ_G0005046	lincRNA gene	Chr10:84800714-84803958 (-)

Homology

• Gene Tree
  Gm17249
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  5
• Genomic Mutations
  1 involving Gm17249
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000097309 (Evidence)
• NCBI Gene
  102637873

Representative Sequences			Length	Strain/Species
genomic	102637873	NCBI Gene Model | MGI Sequence Detail	2120	C57BL/6J
transcript	AK134099	GenBank | ENA | DDBJ | MGI Sequence Detail	2512	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Phenotypes 7
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9