Rab11bos1 Gene Detail

Summary

• Symbol
  Rab11bos1
• Name
  RAB11B, member RAS oncogene family, opposite strand 1
• Synonyms
  Gm17251

• Feature Type
  lncRNA gene
• IDs
  MGI:4936885
  NCBI Gene: 115488819
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr17:33978946-33980845 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 17.98 cM
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4936885	lncRNA gene	Chr17:33974228-33980845 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015347	unclassified non-coding RNA gene	Chr17:33690728-33692617 (+)
A/J	MGP_AJ_G0015322	unclassified non-coding RNA gene	Chr17:32535699-32537603 (+)
AKR/J	MGP_AKRJ_G0015285	unclassified non-coding RNA gene	Chr17:32911123-32913049 (+)
BALB/cJ	MGP_BALBcJ_G0015285	unclassified non-coding RNA gene	Chr17:32682677-32684572 (+)
C3H/HeJ	MGP_C3HHeJ_G0015109	unclassified non-coding RNA gene	Chr17:33251284-33253165 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015739	unclassified non-coding RNA gene	Chr17:34937622-34939499 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013480	unclassified non-coding RNA gene	Chr17:30045832-30047729 (+)
CAST/EiJ	MGP_CASTEiJ_G0014660	unclassified non-coding RNA gene	Chr17:33373945-33375558 (+)
CBA/J	MGP_CBAJ_G0015088	unclassified non-coding RNA gene	Chr17:36335315-36337201 (+)
DBA/2J	MGP_DBA2J_G0015183	unclassified non-coding RNA gene	Chr17:31916665-31918560 (+)
FVB/NJ	MGP_FVBNJ_G0015190	unclassified non-coding RNA gene	Chr17:31774680-31776562 (+)
LP/J	MGP_LPJ_G0015263	unclassified non-coding RNA gene	Chr17:33969615-33971488 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015216	unclassified non-coding RNA gene	Chr17:35380474-35387146 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015779	unclassified non-coding RNA gene	Chr17:33238319-33240200 (+)
PWK/PhJ	MGP_PWKPhJ_G0014450	unclassified non-coding RNA gene	Chr17:30807221-30812410 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014237	unclassified non-coding RNA gene	Chr17:31211217-31213097 (+)
WSB/EiJ	MGP_WSBEiJ_G0014767	unclassified non-coding RNA gene	Chr17:33280919-33282788 (+)

Homology

• Human Ortholog
  RAB11B-AS1, RAB11B antisense RNA 1

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  RAB11B-AS1, RAB11B antisense RNA 1
  
• Synonyms
  MIR4999HG
• Links
  HGNC:44178

  NCBI Gene ID: 100507567

  
  
• Chr Location
  chr19:8374372-8390691 (-)  GRCh38

---

• MGI Vertebrate Homology
  Rab11bos1 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: RAB11B-AS1
• Gene Tree
  Rab11bos1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  8
• Gene trapped
  8
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000090952 (Evidence)
• NCBI Gene
  115488819

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090952	Ensembl Gene Model | MGI Sequence Detail	1900	C57BL/6J
transcript	ENSMUST00000247124	Ensembl | MGI Sequence Detail	1875	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:7525396

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Rab11bos1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143792	Chr17:33978947-33978997 (+)	26 bp
Tssr143793	Chr17:33979004-33979028 (+)	70 bp
Tssr143794	Chr17:33980041-33980046 (+)	1,098 bp