Gm17276 Gene Detail

Summary

• Symbol
  Gm17276
• Name
  predicted gene, 17276

• Feature Type
  lncRNA gene
• IDs
  MGI:4936910
  NCBI Gene: 100504381
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr17:32332385-32360817 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 17.36 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  968 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4936910	lncRNA gene	Chr17:32332385-32360817 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005717	lincRNA gene	Chr17:31932168-31961834 (+)
A/J	MGP_AJ_G0005706	lincRNA gene	Chr17:30880606-30909563 (+)
AKR/J	MGP_AKRJ_G0005685	lincRNA gene	Chr17:31154144-31196498 (+)
BALB/cJ	MGP_BALBcJ_G0005686	lincRNA gene	Chr17:30969730-30998265 (+)
C3H/HeJ	MGP_C3HHeJ_G0005633	lincRNA gene	Chr17:31548280-31578164 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005844	lincRNA gene	Chr17:33028948-33057823 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005197	lincRNA gene	Chr17:27984296-28014584 (+)
CAST/EiJ	MGP_CASTEiJ_G0005575	lincRNA gene	Chr17:31595792-31624452 (+)
CBA/J	MGP_CBAJ_G0005621	lincRNA gene	Chr17:34448808-34488005 (+)
DBA/2J	MGP_DBA2J_G0005639	lincRNA gene	Chr17:30258276-30287090 (+)
FVB/NJ	MGP_FVBNJ_G0005665	lincRNA gene	Chr17:30083711-30113261 (+)
LP/J	MGP_LPJ_G0005720	lincRNA gene	Chr17:32151725-32183100 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005650	lincRNA gene	Chr17:33541943-33572851 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005844	lincRNA gene	Chr17:31516693-31546422 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0005440	lincRNA gene	Chr17:29522845-29562719 (+)
WSB/EiJ	MGP_WSBEiJ_G0005627	lincRNA gene	Chr17:31493071-31529479 (+)

Homology

• Gene Tree
  Gm17276
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000097305 (Evidence)
• NCBI Gene
  100504381

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097305	Ensembl Gene Model | MGI Sequence Detail	28433	C57BL/6J
transcript	ENSMUST00000180839	Ensembl | MGI Sequence Detail	2786	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm17276:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143705	Chr17:32332720-32332730 (+)	340 bp
Tssr143706	Chr17:32332778-32332818 (+)	413 bp
Tssr143707	Chr17:32332820-32332842 (+)	446 bp