Gm17300 Gene Detail

Summary

• Symbol
  Gm17300
• Name
  predicted gene, 17300

• Feature Type
  lncRNA gene
• IDs
  MGI:4936934
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:132079083-132080693 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 65.24 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  168 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4936934	lncRNA gene	Chr4:132079083-132080693 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006531	lincRNA gene	Chr4:134497509-134499272 (+)
A/J	MGP_AJ_G0006523	lincRNA gene	Chr4:128908270-128909880 (+)
AKR/J	MGP_AKRJ_G0006497	lincRNA gene	Chr4:132527492-132529133 (+)
BALB/cJ	MGP_BALBcJ_G0006497	lincRNA gene	Chr4:129520391-129522004 (+)
C3H/HeJ	MGP_C3HHeJ_G0006447	lincRNA gene	Chr4:132789087-132790699 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006663	lincRNA gene	Chr4:139347221-139348830 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005940	lincRNA gene	Chr4:121984102-121985737 (+)
CAST/EiJ	MGP_CASTEiJ_G0006379	lincRNA gene	Chr4:130865300-130866907 (+)
CBA/J	MGP_CBAJ_G0006430	lincRNA gene	Chr4:142922362-142923970 (+)
DBA/2J	MGP_DBA2J_G0006452	lincRNA gene	Chr4:129331409-129333019 (+)
FVB/NJ	MGP_FVBNJ_G0006474	lincRNA gene	Chr4:128180113-128181723 (+)
LP/J	MGP_LPJ_G0006532	lincRNA gene	Chr4:134653479-134655222 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006461	lincRNA gene	Chr4:147512366-147513976 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006667	lincRNA gene	Chr4:132932292-132933904 (+)
PWK/PhJ	MGP_PWKPhJ_G0006316	lincRNA gene	Chr4:126011789-126013440 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006225	lincRNA gene	Chr4:128805461-128807081 (+)
WSB/EiJ	MGP_WSBEiJ_G0006424	lincRNA gene	Chr4:133117307-133118917 (+)

Homology

• Gene Tree
  Gm17300
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  2
• Gene trapped
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm17300
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000091021 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091021	Ensembl Gene Model | MGI Sequence Detail	1611	C57BL/6J
transcript	ENSMUST00000172202	Ensembl | MGI Sequence Detail	1527	Not Applicable

References

• Summaries
  All 7

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm17300:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39371	Chr4:132079079-132079088 (+)	1 bp