Gm17308 Gene Detail

Summary

• Symbol
  Gm17308
• Name
  predicted gene, 17308

• Feature Type
  lncRNA gene
• IDs
  MGI:4936942
  NCBI Gene: 100503882
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:5155336-5159836 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 1.96 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  190 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4936942	lncRNA gene	Chr3:5155336-5159840 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006113	lincRNA gene	Chr3:1842580-1847076 (+)
A/J	MGP_AJ_G0006104	lincRNA gene	Chr3:2221707-2226207 (+)
AKR/J	MGP_AKRJ_G0006080	lincRNA gene	Chr3:1986036-1990536 (+)
BALB/cJ	MGP_BALBcJ_G0006080	lincRNA gene	Chr3:1920666-1925166 (+)
C3H/HeJ	MGP_C3HHeJ_G0006030	lincRNA gene	Chr3:2223997-2228497 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006242	lincRNA gene	Chr3:2319176-2323676 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005562	lincRNA gene	Chr3:1523316-1527794 (+)
CAST/EiJ	MGP_CASTEiJ_G0005967	lincRNA gene	Chr3:2287668-2292319 (+)
CBA/J	MGP_CBAJ_G0006015	lincRNA gene	Chr3:2024409-2028909 (+)
DBA/2J	MGP_DBA2J_G0006035	lincRNA gene	Chr3:1819467-1823971 (+)
FVB/NJ	MGP_FVBNJ_G0006060	lincRNA gene	Chr3:1770015-1774511 (+)
LP/J	MGP_LPJ_G0006117	lincRNA gene	Chr3:2365677-2370173 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006049	lincRNA gene	Chr3:2615547-2621638 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006245	lincRNA gene	Chr3:1813562-1818058 (+)
PWK/PhJ	MGP_PWKPhJ_G0005912	lincRNA gene	Chr3:2080783-2085475 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005822	lincRNA gene	Chr3:1958860-1963388 (+)
WSB/EiJ	MGP_WSBEiJ_G0006015	lincRNA gene	Chr3:1830420-1834966 (+)

Homology

• Gene Tree
  Gm17308
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000096922 (Evidence)
• NCBI Gene
  100503882

Representative Sequences			Length	Strain/Species
genomic	100503882	NCBI Gene Model | MGI Sequence Detail	4501	C57BL/6J
transcript	NR_153343	RefSeq | MGI Sequence Detail	1997	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm17308:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28264	Chr3:5155328-5155375 (+)	16 bp