Gm17354 Gene Detail

Summary

• Symbol
  Gm17354
• Name
  predicted gene, 17354

• Feature Type
  lncRNA gene
• IDs
  MGI:4936988
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:108491040-108494638 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 50.64 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  175 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4936988	lncRNA gene	Chr4:108491040-108494638 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0006490	lincRNA gene	Chr4:109385380-109388983 (-)
A/J	MGP_AJ_G0006482	lincRNA gene	Chr4:105444015-105447639 (-)
AKR/J	MGP_AKRJ_G0006456	lincRNA gene	Chr4:108071203-108074864 (-)
BALB/cJ	MGP_BALBcJ_G0006456	lincRNA gene	Chr4:105653077-105656730 (-)
C3H/HeJ	MGP_C3HHeJ_G0006406	lincRNA gene	Chr4:108793478-108797814 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0006622	lincRNA gene	Chr4:113301548-113306747 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005902	lincRNA gene	Chr4:100729571-100733128 (-)
CAST/EiJ	MGP_CASTEiJ_G0006338	lincRNA gene	Chr4:106651398-106654922 (-)
CBA/J	MGP_CBAJ_G0006389	lincRNA gene	Chr4:117031627-117035277 (-)
DBA/2J	MGP_DBA2J_G0006411	lincRNA gene	Chr4:105076753-105080355 (-)
FVB/NJ	MGP_FVBNJ_G0006433	lincRNA gene	Chr4:103943830-103947399 (-)
LP/J	MGP_LPJ_G0006491	lincRNA gene	Chr4:109627322-109630899 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006420	lincRNA gene	Chr4:122228186-122234431 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006626	lincRNA gene	Chr4:108310452-108314522 (-)
PWK/PhJ	MGP_PWKPhJ_G0006275	lincRNA gene	Chr4:103352206-103356001 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0006186	lincRNA gene	Chr4:105642331-105646523 (-)
WSB/EiJ	MGP_WSBEiJ_G0006384	lincRNA gene	Chr4:108489023-108493863 (-)

Homology

• Gene Tree
  Gm17354
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm17354
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000091985 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091985	Ensembl Gene Model | MGI Sequence Detail	3599	C57BL/6J
transcript	ENSMUST00000170933	Ensembl | MGI Sequence Detail	3039	Not Applicable

References

• Summaries
  All 7

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for Gm17354:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr42734	Chr4:108495820-108495833 (-)	-1,189 bp