Gm17416 Gene Detail

Summary

• Symbol
  Gm17416
• Name
  predicted gene, 17416

• Feature Type
  protein coding gene
• IDs
  MGI:4937050
  NCBI Gene: 100579149
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:152404897-152411458 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 75.30 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  240 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937050	protein coding gene	Chr2:152404897-152411536 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0026667	protein coding gene	Chr2:157132958-157133158 (+)
A/J	MGP_AJ_G0026633	protein coding gene	Chr2:150858086-150858286 (+)
AKR/J	MGP_AKRJ_G0026603	protein coding gene	Chr2:155263245-155263445 (+)
BALB/cJ	MGP_BALBcJ_G0026642	protein coding gene	Chr2:151168467-151168667 (+)
C3H/HeJ	MGP_C3HHeJ_G0026385	protein coding gene	Chr2:155643520-155643720 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0027091	protein coding gene	Chr2:161700215-161700415 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0024462	protein coding gene	Chr2:144451843-144452043 (+)
CAST/EiJ	MGP_CASTEiJ_G0025846	protein coding gene	Chr2:155889222-155889422 (+)
CBA/J	MGP_CBAJ_G0026363	protein coding gene	Chr2:167631255-167631455 (+)
DBA/2J	MGP_DBA2J_G0026499	protein coding gene	Chr2:150072343-150072543 (+)
FVB/NJ	MGP_FVBNJ_G0026465	protein coding gene	Chr2:148523974-148524174 (+)
LP/J	MGP_LPJ_G0026603	protein coding gene	Chr2:157278469-157278669 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0026486	protein coding gene	Chr2:171739254-171739454 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0027147	protein coding gene	Chr2:155148613-155148813 (+)
PWK/PhJ	MGP_PWKPhJ_G0025580	protein coding gene	Chr2:149593963-149594163 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0025383	protein coding gene	Chr2:153991992-153992192 (+)
WSB/EiJ	MGP_WSBEiJ_G0025916	protein coding gene	Chr2:156063977-156064177 (+)

Homology

• Gene Tree
  Gm17416
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm17416
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  2
• UniProt
  2

• Ensembl
  ENSMUSG00000090485 (Evidence)
• NCBI Gene
  100579149

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090485	Ensembl Gene Model | MGI Sequence Detail	6562	C57BL/6J
transcript	ENSMUST00000238626	Ensembl | MGI Sequence Detail	317	Not Applicable
polypeptide	ENSMUSP00000158829	Ensembl | MGI Sequence Detail	87	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR025933 Beta-defensin
  IPR050544 Beta-defensin antimicrobial peptides

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm17416:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr20803	Chr2:152404897-152404913 (+)	8 bp
Tssr20804	Chr2:152405161-152405167 (+)	267 bp