Gm17494 Gene Detail

Summary

• Symbol
  Gm17494
• Name
  predicted gene, 17494

• Feature Type
  lncRNA gene
• IDs
  MGI:4937128
  NCBI Gene: 100503394
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:122049607-122087369 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 52.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  832 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937128	lncRNA gene	Chr3:122049607-122087369 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015522	unclassified non-coding RNA gene	Chr3:124546439-124553074 (-)
A/J	MGP_AJ_G0015499	unclassified non-coding RNA gene	Chr3:120374184-120383776 (-)
AKR/J	MGP_AKRJ_G0015463	unclassified non-coding RNA gene	Chr3:123442219-123448979 (-)
BALB/cJ	MGP_BALBcJ_G0015461	unclassified non-coding RNA gene	Chr3:120184308-120191446 (-)
C3H/HeJ	MGP_C3HHeJ_G0015284	unclassified non-coding RNA gene	Chr3:123839742-123847366 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015915	unclassified non-coding RNA gene	Chr3:129049788-129059906 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013650	unclassified non-coding RNA gene	Chr3:115802532-115809071 (-)
CAST/EiJ	MGP_CASTEiJ_G0014838	unclassified non-coding RNA gene	Chr3:123225684-123232121 (-)
CBA/J	MGP_CBAJ_G0015265	unclassified non-coding RNA gene	Chr3:133438275-133445090 (-)
DBA/2J	MGP_DBA2J_G0015359	unclassified non-coding RNA gene	Chr3:119513026-119519459 (-)
FVB/NJ	MGP_FVBNJ_G0015366	unclassified non-coding RNA gene	Chr3:117123416-117130434 (-)
LP/J	MGP_LPJ_G0015438	unclassified non-coding RNA gene	Chr3:126054678-126067365 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015390	unclassified non-coding RNA gene	Chr3:140997678-141006409 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015956	unclassified non-coding RNA gene	Chr3:122996910-123006233 (-)
PWK/PhJ	MGP_PWKPhJ_G0014624	unclassified non-coding RNA gene	Chr3:119213458-119219894 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014412	unclassified non-coding RNA gene	Chr3:121091664-121098074 (-)
WSB/EiJ	MGP_WSBEiJ_G0014944	unclassified non-coding RNA gene	Chr3:123724956-123734464 (-)

Homology

• Gene Tree
  Gm17494
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  5
• Genomic Mutations
  1 involving Gm17494
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  22

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000057359 (Evidence)
• NCBI Gene
  100503394

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000057359	Ensembl Gene Model | MGI Sequence Detail	37763	C57BL/6J
transcript	ENSMUST00000199060	Ensembl | MGI Sequence Detail	6844	Not Applicable

Molecular
Reagents

• All nucleic 22

  cDNA 22

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9