Gm17501 Gene Detail

Summary

• Symbol
  Gm17501
• Name
  predicted gene, 17501

• Feature Type
  lncRNA gene
• IDs
  MGI:4937135
  NCBI Gene: 100216343
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr3:145356067-145383764 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 70.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  738 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937135	lncRNA gene	Chr3:145355863-145383807 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006353	lincRNA gene	Chr3:149085009-149123999 (+)
A/J	MGP_AJ_G0006346	lincRNA gene	Chr3:143772523-143800882 (+)
AKR/J	MGP_AKRJ_G0006321	lincRNA gene	Chr3:147583188-147620258 (+)
BALB/cJ	MGP_BALBcJ_G0006320	lincRNA gene	Chr3:143584302-143620540 (+)
C3H/HeJ	MGP_C3HHeJ_G0006271	lincRNA gene	Chr3:147954466-147998115 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006485	lincRNA gene	Chr3:154167225-154198600 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005780	lincRNA gene	Chr3:138855044-138880748 (+)
CAST/EiJ	MGP_CASTEiJ_G0006205	lincRNA gene	Chr3:147917101-147949440 (+)
CBA/J	MGP_CBAJ_G0006254	lincRNA gene	Chr3:159549258-159594994 (+)
DBA/2J	MGP_DBA2J_G0006275	lincRNA gene	Chr3:142924426-142952594 (+)
FVB/NJ	MGP_FVBNJ_G0006297	lincRNA gene	Chr3:140331968-140359926 (+)
LP/J	MGP_LPJ_G0006357	lincRNA gene	Chr3:150472939-150513482 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006287	lincRNA gene	Chr3:167863520-167907068 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006491	lincRNA gene	Chr3:147180106-147210251 (+)
PWK/PhJ	MGP_PWKPhJ_G0006142	lincRNA gene	Chr3:142767322-142795603 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006055	lincRNA gene	Chr3:145364039-145391592 (+)
WSB/EiJ	MGP_WSBEiJ_G0006251	lincRNA gene	Chr3:148140397-148171307 (+)

Homology

• Gene Tree
  Gm17501
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm17501
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  715
• Tissues
  8
• cDNA Data
  4
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000097183 (Evidence)
• NCBI Gene
  100216343

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097183	Ensembl Gene Model | MGI Sequence Detail	27698	C57BL/6J
transcript	ENSMUST00000181247	Ensembl | MGI Sequence Detail	1700	Not Applicable
polypeptide	B8XR25	UniProt | EBI | MGI Sequence Detail	69	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 5

  cDNA 4

  Primer pair 1

References

• Summaries
  All 9

  Developmental Gene Expression 1

  Diseases 1

  Phenotypes 2
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm17501:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr32291	Chr3:145357844-145357864 (+)	1,787 bp
Tssr32292	Chr3:145358116-145358132 (+)	2,057 bp
Tssr32293	Chr3:145358162-145358211 (+)	2,120 bp