Gm17518 Gene Detail

Summary

• Symbol
  Gm17518
• Name
  predicted gene, 17518

• Feature Type
  lncRNA gene
• IDs
  MGI:4937152
  NCBI Gene: 100503390
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:90524358-90525046 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 51.88 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937152	lncRNA gene	Chr16:90524358-90526848 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm17518
  

Human Diseases

• References
  4 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  70 phenotype references
  

• All Mutations and Alleles
  10
• Gene trapped
  2
• Spontaneous
  1
• Targeted
  6
• Genomic Mutations
  8 involving Gm17518
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  8
• RefSeq
  3

• Ensembl
  ENSMUSG00000120489 (Evidence)
• NCBI Gene
  100503390

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120489	Ensembl Gene Model | MGI Sequence Detail	689	C57BL/6J
transcript	ENSMUST00000243670	Ensembl | MGI Sequence Detail	689	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 74

  Diseases 4

  Phenotypes 70
• Earliest
  J:42265 Huang TT, et al., Superoxide-mediated cytotoxicity in superoxide dismutase-deficient fetal fibroblasts. Arch Biochem Biophys. 1997 Aug 15;344(2):424-32
• Latest
  J:335294 Redhead Y, et al., Craniofacial dysmorphology in Down syndrome is caused by increased dosage of Dyrk1a and at least three other genes. Development. 2023 Apr 15;150(8):dev201077

TSS for Gm17518:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139296	Chr16:90524378-90524419 (+)	41 bp