Gm17540 Gene Detail

Summary

• Symbol
  Gm17540
• Name
  predicted gene, 17540

• Feature Type
  lncRNA gene
• IDs
  MGI:4937174
  NCBI Gene: 100503925
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:40442451-40444916 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 21.42 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937174	lncRNA gene	Chr9:40442451-40444916 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007425	lincRNA gene	Chr9:38744890-38747365 (+)
A/J	MGP_AJ_G0007420	lincRNA gene	Chr9:37734365-37736841 (+)
AKR/J	MGP_AKRJ_G0007393	lincRNA gene	Chr9:38459261-38461734 (+)
BALB/cJ	MGP_BALBcJ_G0007398	lincRNA gene	Chr9:37505508-37507984 (+)
C3H/HeJ	MGP_C3HHeJ_G0007342	lincRNA gene	Chr9:38986358-38988834 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007570	lincRNA gene	Chr9:39980094-39982559 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006759	lincRNA gene	Chr9:37393064-37395526 (+)
CAST/EiJ	MGP_CASTEiJ_G0007246	lincRNA gene	Chr9:38703686-38706153 (+)
CBA/J	MGP_CBAJ_G0007324	lincRNA gene	Chr9:41362615-41365091 (+)
DBA/2J	MGP_DBA2J_G0007348	lincRNA gene	Chr9:37694792-37697265 (+)
FVB/NJ	MGP_FVBNJ_G0007366	lincRNA gene	Chr9:36918342-36920818 (+)
LP/J	MGP_LPJ_G0007430	lincRNA gene	Chr9:39033021-39035496 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007346	lincRNA gene	Chr9:43409431-43411904 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007573	lincRNA gene	Chr9:38380898-38383371 (+)
PWK/PhJ	MGP_PWKPhJ_G0007187	lincRNA gene	Chr9:37500636-37503098 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007092	lincRNA gene	Chr9:38623700-38626158 (+)
WSB/EiJ	MGP_WSBEiJ_G0007306	lincRNA gene	Chr9:38400347-38402822 (+)

Homology

• Gene Tree
  Gm17540
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000097205 (Evidence)
• NCBI Gene
  100503925

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097205	Ensembl Gene Model | MGI Sequence Detail	2466	C57BL/6J
transcript	ENSMUST00000181617	Ensembl | MGI Sequence Detail	1528	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;