Gm17552 Gene Detail

Summary

• Symbol
  Gm17552
• Name
  predicted gene, 17552

• Feature Type
  lncRNA gene
• IDs
  MGI:4937186
  NCBI Gene: 102631780
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr19:4219565-4224283 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 3.87 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  137 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937186	lncRNA gene	Chr19:4219565-4224283 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005807	lincRNA gene	Chr19:1010016-1014734 (+)
A/J	MGP_AJ_G0005796	lincRNA gene	Chr19:971348-976066 (+)
AKR/J	MGP_AKRJ_G0005773	lincRNA gene	Chr19:996073-1000791 (+)
BALB/cJ	MGP_BALBcJ_G0005775	lincRNA gene	Chr19:960769-965487 (+)
C3H/HeJ	MGP_C3HHeJ_G0005723	lincRNA gene	Chr19:991147-995865 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005936	lincRNA gene	Chr19:1047572-1052290 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005279	lincRNA gene	Chr19:914492-919198 (+)
CAST/EiJ	MGP_CASTEiJ_G0005664	lincRNA gene	Chr19:1004897-1009612 (+)
CBA/J	MGP_CBAJ_G0005710	lincRNA gene	Chr19:1105039-1109757 (+)
DBA/2J	MGP_DBA2J_G0005728	lincRNA gene	Chr19:931173-935891 (+)
FVB/NJ	MGP_FVBNJ_G0005755	lincRNA gene	Chr19:941305-946018 (+)
LP/J	MGP_LPJ_G0005809	lincRNA gene	Chr19:1001395-1006113 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005741	lincRNA gene	Chr19:1051166-1055884 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005934	lincRNA gene	Chr19:993998-998716 (+)
PWK/PhJ	MGP_PWKPhJ_G0005609	lincRNA gene	Chr19:983684-988386 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005525	lincRNA gene	Chr19:975403-980089 (+)
WSB/EiJ	MGP_WSBEiJ_G0005716	lincRNA gene	Chr19:981309-986027 (+)

Homology

• Gene Tree
  Gm17552
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000097233 (Evidence)
• NCBI Gene
  102631780

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097233	Ensembl Gene Model | MGI Sequence Detail	4719	C57BL/6J
transcript	ENSMUST00000181211	Ensembl | MGI Sequence Detail	3877	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9