Prox1os Gene Detail

Summary

• Symbol
  Prox1os
• Name
  prospero homeobox 1, opposite strand
• Synonyms
  Gm17566

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:4937200
  NCBI Gene: 102632463
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr1:189902493-189949476 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 96.07 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1116 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937200	antisense lncRNA gene	Chr1:189902481-189952583 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002823	antisense lncRNA gene	Chr1:197129013-197178778 (+)
A/J	MGP_AJ_G0002800	antisense lncRNA gene	Chr1:189056280-189103163 (+)
AKR/J	MGP_AKRJ_G0002781	antisense lncRNA gene	Chr1:194635965-194700510 (+)
BALB/cJ	MGP_BALBcJ_G0002787	antisense lncRNA gene	Chr1:189730883-189785895 (+)
C3H/HeJ	MGP_C3HHeJ_G0002745	antisense lncRNA gene	Chr1:195505629-195556097 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002929	antisense lncRNA gene	Chr1:203415166-203468083 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002476	antisense lncRNA gene	Chr1:179972304-180020561 (+)
CAST/EiJ	MGP_CASTEiJ_G0002717	antisense lncRNA gene	Chr1:195071469-195124390 (+)
CBA/J	MGP_CBAJ_G0002740	antisense lncRNA gene	Chr1:211001685-211048143 (+)
DBA/2J	MGP_DBA2J_G0002747	antisense lncRNA gene	Chr1:187794295-187842022 (+)
FVB/NJ	MGP_FVBNJ_G0002767	antisense lncRNA gene	Chr1:185909237-185959777 (+)
LP/J	MGP_LPJ_G0002823	antisense lncRNA gene	Chr1:198310941-198359988 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002757	antisense lncRNA gene	Chr1:217694521-217749635 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002934	antisense lncRNA gene	Chr1:194546145-194601533 (+)
PWK/PhJ	MGP_PWKPhJ_G0002675	antisense lncRNA gene	Chr1:187060659-187110285 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002625	antisense lncRNA gene	Chr1:193513373-193568977 (+)
WSB/EiJ	MGP_WSBEiJ_G0002746	antisense lncRNA gene	Chr1:194752628-194802271 (+)

Homology

• Gene Tree
  Prox1os
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000079045 (Evidence)
• NCBI Gene
  102632463

Representative Sequences			Length	Strain/Species
genomic	102632463	NCBI Gene Model | MGI Sequence Detail	46984	C57BL/6J
transcript	NR_151620	RefSeq | MGI Sequence Detail	847	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Prox1os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10702	Chr1:189902478-189902498 (+)	-5 bp
Tssr10703	Chr1:189902519-189902528 (+)	31 bp
Tssr10704	Chr1:189902538-189902555 (+)	54 bp
Tssr10705	Chr1:189903282-189903284 (+)	790 bp
Tssr10706	Chr1:189904244-189904251 (+)	1,755 bp