Gm17586 Gene Detail

Summary

• Symbol
  Gm17586
• Name
  predicted gene, 17586

• Feature Type
  lncRNA gene
• IDs
  MGI:4937220
  NCBI Gene: 115487829
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:120524284-120525958 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 84.36 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937220	lncRNA gene	Chr11:120524284-120528928 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm17586
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  10
• RefSeq
  1

• Ensembl
  ENSMUSG00000120999 (Evidence)
• NCBI Gene
  115487829

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120999	Ensembl Gene Model | MGI Sequence Detail	1675	C57BL/6J
transcript	ENSMUST00000247287	Ensembl | MGI Sequence Detail	1675	Not Applicable

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm17586:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr106330	Chr11:120523507-120523540 (+)	-760 bp
Tssr106331	Chr11:120524009-120524020 (+)	-269 bp
Tssr106332	Chr11:120524545-120524587 (+)	282 bp