Gm17590 Gene Detail

Summary

• Symbol
  Gm17590
• Name
  predicted gene, 17590

• Feature Type
  lncRNA gene
• IDs
  MGI:4937224
  NCBI Gene: 100579155
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:3522861-3530873 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 2.15 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  286 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937224	lncRNA gene	Chr5:3522861-3530873 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004025	antisense lncRNA gene	Chr5:277776-285629 (-)
A/J	MGP_AJ_G0004006	antisense lncRNA gene	Chr5:167414-175901 (-)
AKR/J	MGP_AKRJ_G0003984	antisense lncRNA gene	Chr5:155258-164295 (-)
BALB/cJ	MGP_BALBcJ_G0003992	antisense lncRNA gene	Chr5:402247-409510 (-)
C3H/HeJ	MGP_C3HHeJ_G0003939	antisense lncRNA gene	Chr5:335508-342789 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004141	antisense lncRNA gene	Chr5:542500-551235 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003622	antisense lncRNA gene	Chr5:200686-207876 (-)
CAST/EiJ	MGP_CASTEiJ_G0003902	antisense lncRNA gene	Chr5:337654-348494 (-)
CBA/J	MGP_CBAJ_G0003932	antisense lncRNA gene	Chr5:428156-439458 (-)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0003967	antisense lncRNA gene	Chr5:222671-230539 (-)
LP/J	MGP_LPJ_G0004028	antisense lncRNA gene	Chr5:321394-330832 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003955	antisense lncRNA gene	Chr5:239938-250562 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004135	antisense lncRNA gene	Chr5:286865-294399 (-)
PWK/PhJ	MGP_PWKPhJ_G0003856	antisense lncRNA gene	Chr5:292156-300548 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003801	antisense lncRNA gene	Chr5:565990-574502 (-)
WSB/EiJ	MGP_WSBEiJ_G0003938	antisense lncRNA gene	Chr5:311602-319415 (-)

Homology

• Gene Tree
  Gm17590
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000106588 (Evidence)
• NCBI Gene
  100579155

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106588	Ensembl Gene Model | MGI Sequence Detail	8013	C57BL/6J
transcript	ENSMUST00000197881	Ensembl | MGI Sequence Detail	1232	Not Applicable
polypeptide	Q3TN47	UniProt | EBI | MGI Sequence Detail	35	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm17590:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49985	Chr5:3530863-3530884 (-)	-1 bp