Trbj2-6 Pseudogene Detail

Summary

• Symbol
  Trbj2-6
• Name
  T cell receptor beta joining 2-6

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:4937236
  NCBI Gene: 100125260
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr6:41520532-41520579 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 19.70 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  87 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937236	pseudogenic gene segment	Chr6:41520532-41520579 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002508	pseudogenic gene segment	Chr6:40052458-40052505 (+)
A/J	MGP_AJ_G0002482	pseudogenic gene segment	Chr6:38305120-38305167 (+)
AKR/J	MGP_AKRJ_G0002468	pseudogenic gene segment	Chr6:39544694-39544741 (+)
BALB/cJ	MGP_BALBcJ_G0002476	pseudogenic gene segment	Chr6:38507249-38507296 (+)
C3H/HeJ	MGP_C3HHeJ_G0002455	pseudogenic gene segment	Chr6:39574455-39574502 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002603	pseudogenic gene segment	Chr6:41065246-41065293 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002201	pseudogenic gene segment	Chr6:36085162-36085209 (+)
CAST/EiJ	MGP_CASTEiJ_G0002417	pseudogenic gene segment	Chr6:39377462-39377509 (+)
CBA/J	MGP_CBAJ_G0002446	pseudogenic gene segment	Chr6:42772801-42772848 (+)
DBA/2J	MGP_DBA2J_G0002451	pseudogenic gene segment	Chr6:38131845-38131892 (+)
FVB/NJ	MGP_FVBNJ_G0002465	pseudogenic gene segment	Chr6:37863225-37863272 (+)
LP/J	MGP_LPJ_G0002507	pseudogenic gene segment	Chr6:40060680-40060727 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002435	pseudogenic gene segment	Chr6:45004992-45005039 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002598	pseudogenic gene segment	Chr6:39520292-39520339 (+)
PWK/PhJ	MGP_PWKPhJ_G0002378	pseudogenic gene segment	Chr6:37756647-37756694 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0002444	pseudogenic gene segment	Chr6:39432582-39432629 (+)

Homology

• Gene Tree
  Trbj2-6
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000090818 (Evidence)
• NCBI Gene
  100125260

Representative Sequences			Length	Strain/Species
genomic	100125260	NCBI Gene Model | MGI Sequence Detail	48	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:7500 Malissen M, et al., Mouse T cell antigen receptor: structure and organization of constant and joining gene segments encoding the beta polypeptide. Cell. 1984 Jul;37(3):1101-10
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Trbj2-6:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55939	Chr6:41520506-41520511 (+)	-23 bp
Tssr55940	Chr6:41520515-41520554 (+)	3 bp
Tssr55941	Chr6:41520559-41520576 (+)	36 bp