Gm17705 Gene Detail

Summary

• Symbol
  Gm17705
• Name
  predicted gene, 17705

• Feature Type
  lncRNA gene
• IDs
  MGI:4937339
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr17:35384095-35393840 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 18.59 cM
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937339	lncRNA gene	Chr17:35384095-35393840 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005727	lincRNA gene	Chr17:35309360-35311427 (+)
A/J	MGP_AJ_G0005715	lincRNA gene	Chr17:34137434-34139501 (+)
AKR/J	MGP_AKRJ_G0005695	lincRNA gene	Chr17:34614748-34616816 (+)
BALB/cJ	MGP_BALBcJ_G0005695	lincRNA gene	Chr17:34277433-34279500 (+)
C3H/HeJ	MGP_C3HHeJ_G0005642	lincRNA gene	Chr17:35016911-35018979 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005852	lincRNA gene	Chr17:36651527-36653594 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005207	lincRNA gene	Chr17:31908156-31910201 (+)
CAST/EiJ	MGP_CASTEiJ_G0005585	lincRNA gene	Chr17:35011246-35013313 (+)
CBA/J	MGP_CBAJ_G0005630	lincRNA gene	Chr17:38159332-38161400 (+)
DBA/2J	MGP_DBA2J_G0005648	lincRNA gene	Chr17:33461804-33463871 (+)
FVB/NJ	MGP_FVBNJ_G0005674	lincRNA gene	Chr17:33303180-33305249 (+)
LP/J	MGP_LPJ_G0005730	lincRNA gene	Chr17:35636871-35638938 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005660	lincRNA gene	Chr17:37089688-37091755 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005853	lincRNA gene	Chr17:34839097-34841165 (+)
PWK/PhJ	MGP_PWKPhJ_G0005529	lincRNA gene	Chr17:32296526-32298593 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005449	lincRNA gene	Chr17:32848392-32850440 (+)
WSB/EiJ	MGP_WSBEiJ_G0005637	lincRNA gene	Chr17:34961156-34963223 (+)

Homology

• Gene Tree
  Gm17705
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000090936 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090936	Ensembl Gene Model | MGI Sequence Detail	9746	C57BL/6J
transcript	ENSMUST00000172285	Ensembl | MGI Sequence Detail	1562	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm17705:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr144258	Chr17:35389963-35389973 (+)	5,873 bp
Tssr144259	Chr17:35390510-35390524 (+)	6,422 bp
Tssr144260	Chr17:35391101-35391137 (+)	7,024 bp