Gm17709 Pseudogene Detail

Summary

• Symbol
  Gm17709
• Name
  predicted gene, 17709

• Feature Type
  pseudogene
• IDs
  MGI:4937343
  NCBI Gene: 100417679
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:122699466-122700561 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 70.82 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937343	pseudogene	Chr8:122699269-122700761 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010957	pseudogene	Chr12:118852362-118853701 (-)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0010938	pseudogene	Chr12:114916773-114917691 (-)
C3H/HeJ	MGP_C3HHeJ_G0010835	pseudogene	Chr12:118238494-118242487 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011580	pseudogene	Chr17:14040917-14042251 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0011155	pseudogene	Chr17:14507043-14511699 (-)
DBA/2J	MGP_DBA2J_G0011204	pseudogene	Chr17:12887288-12888629 (-)
FVB/NJ	MGP_FVBNJ_G0011208	pseudogene	Chr17:12734576-12735530 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0011204	pseudogene	Chr17:14028939-14030630 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011121	pseudogene	Chr12:297930-299301 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm17709
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14
• RefSeq
  1

• Ensembl
  ENSMUSG00000091952 (Evidence)
• NCBI Gene
  100417679

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091952	Ensembl Gene Model | MGI Sequence Detail	1096	C57BL/6J
transcript	ENSMUST00000174536	Ensembl | MGI Sequence Detail	1096	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm17709:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr83254	Chr8:122700869-122700870 (-)	-309 bp