Gm17024 Gene Detail

Summary

• Symbol
  Gm17024
• Name
  predicted gene 17024

• Feature Type
  lncRNA gene
• IDs
  MGI:4937851
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr12:40259486-40261072 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 18.06 cM

Strain
Comparison

• SNPs within 2kb
  125 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937851	lncRNA gene	Chr12:40259486-40261072 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003134	antisense lncRNA gene	Chr12:38622061-38623647 (-)
A/J	MGP_AJ_G0003111	antisense lncRNA gene	Chr12:37355664-37357250 (-)
AKR/J	MGP_AKRJ_G0003091	antisense lncRNA gene	Chr12:38483679-38485265 (-)
BALB/cJ	MGP_BALBcJ_G0003098	antisense lncRNA gene	Chr12:37570331-37571917 (-)
C3H/HeJ	MGP_C3HHeJ_G0003054	antisense lncRNA gene	Chr12:38421810-38424605 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003241	antisense lncRNA gene	Chr12:39786639-39788225 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002775	antisense lncRNA gene	Chr12:36486523-36488089 (-)
CAST/EiJ	MGP_CASTEiJ_G0003023	antisense lncRNA gene	Chr12:33606735-33608323 (-)
CBA/J	MGP_CBAJ_G0003051	antisense lncRNA gene	Chr12:41138707-41140293 (-)
DBA/2J	MGP_DBA2J_G0003056	antisense lncRNA gene	Chr12:37213362-37214949 (-)
FVB/NJ	MGP_FVBNJ_G0003076	antisense lncRNA gene	Chr12:36842735-36844230 (-)
LP/J	MGP_LPJ_G0003131	antisense lncRNA gene	Chr12:38606057-38607643 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003065	antisense lncRNA gene	Chr12:41297511-41299097 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003245	antisense lncRNA gene	Chr12:38043855-38045441 (-)
PWK/PhJ	MGP_PWKPhJ_G0002981	antisense lncRNA gene	Chr12:31890080-31891769 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0002925	antisense lncRNA gene	Chr12:32697546-32699123 (-)
WSB/EiJ	MGP_WSBEiJ_G0003054	antisense lncRNA gene	Chr12:38350530-38352116 (-)

Homology

• Gene Tree
  Gm17024
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000090582 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090582	Ensembl Gene Model | MGI Sequence Detail	1587	C57BL/6J
transcript	ENSMUST00000165676	Ensembl | MGI Sequence Detail	634	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm17024:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr116174	Chr12:40260544-40260562 (-)	519 bp
Tssr116173	Chr12:40259667-40259688 (-)	1,394 bp