Gm17025 Gene Detail

Summary

• Symbol
  Gm17025
• Name
  predicted gene 17025

• Feature Type
  lncRNA gene
• IDs
  MGI:4937852
  NCBI Gene: 102634155
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr15:81299651-81305886 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 38.09 cM

Strain
Comparison

• SNPs within 2kb
  245 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937852	lncRNA gene	Chr15:81299004-81305886 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003297	antisense lncRNA gene	Chr15:81837429-81841057 (-)
A/J	MGP_AJ_G0003273	antisense lncRNA gene	Chr15:78963492-78967117 (-)
AKR/J	MGP_AKRJ_G0003256	antisense lncRNA gene	Chr15:81159714-81163341 (-)
BALB/cJ	MGP_BALBcJ_G0003262	antisense lncRNA gene	Chr15:78992283-78995911 (-)
C3H/HeJ	MGP_C3HHeJ_G0003215	antisense lncRNA gene	Chr15:81154035-81157663 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003404	antisense lncRNA gene	Chr15:85031891-85035519 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002926	antisense lncRNA gene	Chr15:75433531-75436631 (-)
CAST/EiJ	MGP_CASTEiJ_G0003181	antisense lncRNA gene	Chr15:81912184-81916920 (-)
CBA/J	MGP_CBAJ_G0003212	antisense lncRNA gene	Chr15:87686657-87690285 (-)
DBA/2J	MGP_DBA2J_G0003217	antisense lncRNA gene	Chr15:78446116-78449744 (-)
FVB/NJ	MGP_FVBNJ_G0003236	antisense lncRNA gene	Chr15:77486845-77490433 (-)
LP/J	MGP_LPJ_G0003290	antisense lncRNA gene	Chr15:81996533-82001170 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003225	antisense lncRNA gene	Chr15:92664357-92667985 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003406	antisense lncRNA gene	Chr15:81224373-81227959 (-)
PWK/PhJ	MGP_PWKPhJ_G0003138	antisense lncRNA gene	Chr15:78474643-78478544 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003084	antisense lncRNA gene	Chr15:81019989-81025315 (-)
WSB/EiJ	MGP_WSBEiJ_G0003215	antisense lncRNA gene	Chr15:81650425-81654055 (-)

Homology

• Gene Tree
  Gm17025
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  23 phenotype references
  

• All Mutations and Alleles
  9
• Chemically induced (other)
  1
• Gene trapped
  6
• Radiation induced
  2
• Genomic Mutations
  3 involving Gm17025
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000091492 (Evidence)
• NCBI Gene
  102634155

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091492	Ensembl Gene Model | MGI Sequence Detail	6236	C57BL/6J
transcript	ENSMUST00000133273	Ensembl | MGI Sequence Detail	1001	Not Applicable

References

• Summaries
  All 27

  Diseases 1

  Phenotypes 23
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for Gm17025:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr135481	Chr15:81305879-81305891 (-)	1 bp
Tssr135480	Chr15:81305674-81305697 (-)	200 bp