Gm17029 Gene Detail

Summary

• Symbol
  Gm17029
• Name
  predicted gene 17029

• Feature Type
  lncRNA gene
• IDs
  MGI:4937856
  NCBI Gene: 102635786
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:149044624-149058235 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 78.87 cM

Strain
Comparison

• SNPs within 2kb
  302 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937856	lncRNA gene	Chr4:149044624-149069128 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004001	antisense lncRNA gene	Chr4:152741778-152776870 (+)
A/J	MGP_AJ_G0003982	antisense lncRNA gene	Chr4:146401222-146426229 (+)
AKR/J	MGP_AKRJ_G0003959	antisense lncRNA gene	Chr4:150401972-150426503 (+)
BALB/cJ	MGP_BALBcJ_G0003968	antisense lncRNA gene	Chr4:146909935-146934985 (+)
C3H/HeJ	MGP_C3HHeJ_G0003915	antisense lncRNA gene	Chr4:150959286-150984287 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004117	antisense lncRNA gene	Chr4:158272083-158296389 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003598	antisense lncRNA gene	Chr4:138823864-138848263 (+)
CAST/EiJ	MGP_CASTEiJ_G0003878	antisense lncRNA gene	Chr4:148178314-148202605 (+)
CBA/J	MGP_CBAJ_G0003908	antisense lncRNA gene	Chr4:162905622-162932529 (+)
DBA/2J	MGP_DBA2J_G0003924	antisense lncRNA gene	Chr4:146510502-146535049 (+)
FVB/NJ	MGP_FVBNJ_G0003943	antisense lncRNA gene	Chr4:145616761-145641094 (+)
LP/J	MGP_LPJ_G0004004	antisense lncRNA gene	Chr4:152699161-152725556 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003931	antisense lncRNA gene	Chr4:166169039-166195576 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004111	antisense lncRNA gene	Chr4:150896385-150921915 (+)
PWK/PhJ	MGP_PWKPhJ_G0003832	antisense lncRNA gene	Chr4:142506011-142531177 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003777	antisense lncRNA gene	Chr4:145138286-145162886 (+)
WSB/EiJ	MGP_WSBEiJ_G0003914	antisense lncRNA gene	Chr4:151056668-151082556 (+)

Homology

• Gene Tree
  Gm17029
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm17029
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2

• Ensembl
  ENSMUSG00000086740 (Evidence)
• NCBI Gene
  102635786

Representative Sequences			Length	Strain/Species
genomic	102635786	NCBI Gene Model | MGI Sequence Detail	13612	C57BL/6J
transcript	AK035651	GenBank | ENA | DDBJ | MGI Sequence Detail	2895	C57BL/6J

Molecular
Reagents

• All nucleic 7

  cDNA 7

References

• Summaries
  All 7

  Phenotypes 1
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8

TSS for Gm17029:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40315	Chr4:149044811-149044822 (+)	193 bp