Gm17042 Pseudogene Detail

Summary

• Symbol
  Gm17042
• Name
  predicted gene 17042

• Feature Type
  pseudogene
• IDs
  MGI:4937869
  NCBI Gene: 100418374
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:103711119-103720992 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 52.98 cM

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937869	pseudogene	Chr12:103710289-103720992 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0040007	pseudogene	Chr12:105561140-105612985 (-)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0039646	pseudogene	Chr12:104885465-105014170 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0039610	pseudogene	Chr12:112883889-112897221 (-)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0039771	pseudogene	Chr12:99613766-99784587 (-)
LP/J	MGP_LPJ_G0039845	pseudogene	Chr12:105355604-105374235 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039754	pseudogene	Chr12:116269739-116340203 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040670	pseudogene	Chr12:103915659-103966573 (-)
PWK/PhJ	MGP_PWKPhJ_G0038427	pseudogene	Chr12:95417407-95601668 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0038974	pseudogene	Chr12:104724706-104734372 (-)

Homology

• Gene Tree
  Gm17042
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm17042
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14
• RefSeq
  1

• Ensembl
  ENSMUSG00000090989 (Evidence)
• NCBI Gene
  100418374

Representative Sequences			Length	Strain/Species
genomic	100418374	NCBI Gene Model | MGI Sequence Detail	9874	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;