Gm17110 Gene Detail

Summary

• Symbol
  Gm17110
• Name
  predicted gene 17110

• Feature Type
  lncRNA gene
• IDs
  MGI:4937937
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:34223672-34224641 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 20.82 cM

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937937	lncRNA gene	Chr14:34223672-34224641 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003235	antisense lncRNA gene	Chr14:27859826-27860792 (+)
A/J	MGP_AJ_G0003211	antisense lncRNA gene	Chr14:26788441-26789410 (+)
AKR/J	MGP_AKRJ_G0003194	antisense lncRNA gene	Chr14:27970182-27971151 (+)
BALB/cJ	MGP_BALBcJ_G0003198	antisense lncRNA gene	Chr14:26966311-26967280 (+)
C3H/HeJ	MGP_C3HHeJ_G0003154	antisense lncRNA gene	Chr14:27896225-27898603 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003341	antisense lncRNA gene	Chr14:28923392-28924361 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002867	antisense lncRNA gene	Chr14:26802009-26802980 (+)
CAST/EiJ	MGP_CASTEiJ_G0003120	antisense lncRNA gene	Chr14:27703493-27704450 (+)
CBA/J	MGP_CBAJ_G0003151	antisense lncRNA gene	Chr14:29981826-29982795 (+)
DBA/2J	MGP_DBA2J_G0003156	antisense lncRNA gene	Chr14:26816407-26817376 (+)
FVB/NJ	MGP_FVBNJ_G0003174	antisense lncRNA gene	Chr14:26776361-26777320 (+)
LP/J	MGP_LPJ_G0003232	antisense lncRNA gene	Chr14:28189749-28190733 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003165	antisense lncRNA gene	Chr14:29116626-29117595 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003342	antisense lncRNA gene	Chr14:27809706-27810675 (+)
PWK/PhJ	MGP_PWKPhJ_G0003078	antisense lncRNA gene	Chr14:26306540-26307509 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003024	antisense lncRNA gene	Chr14:27411088-27412073 (+)
WSB/EiJ	MGP_WSBEiJ_G0003154	antisense lncRNA gene	Chr14:27860241-27861207 (+)

Homology

• Gene Tree
  Gm17110
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000090779 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090779	Ensembl Gene Model | MGI Sequence Detail	970	C57BL/6J
transcript	ENSMUST00000171248	Ensembl | MGI Sequence Detail	735	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm17110:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125082	Chr14:34223900-34223919 (+)	238 bp