Gm17122 Gene Detail

Summary

• Symbol
  Gm17122
• Name
  predicted gene 17122

• Feature Type
  lncRNA gene
• IDs
  MGI:4937949
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:113980662-113981177 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 55.64 cM

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937949	lncRNA gene	Chr5:113980662-113981177 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004145	antisense lncRNA gene	Chr5:116529226-116529741 (+)
A/J	MGP_AJ_G0004124	antisense lncRNA gene	Chr5:111964756-111965271 (+)
AKR/J	MGP_AKRJ_G0004105	antisense lncRNA gene	Chr5:115519316-115519831 (+)
BALB/cJ	MGP_BALBcJ_G0004111	antisense lncRNA gene	Chr5:113332711-113333226 (+)
C3H/HeJ	MGP_C3HHeJ_G0004059	antisense lncRNA gene	Chr5:116004013-116004528 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004259	antisense lncRNA gene	Chr5:121045995-121046510 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003736	antisense lncRNA gene	Chr5:106791228-106791728 (+)
CAST/EiJ	MGP_CASTEiJ_G0004021	antisense lncRNA gene	Chr5:114925149-114925664 (+)
CBA/J	MGP_CBAJ_G0004053	antisense lncRNA gene	Chr5:125610818-125611333 (+)
DBA/2J	MGP_DBA2J_G0004068	antisense lncRNA gene	Chr5:112024198-112024713 (+)
FVB/NJ	MGP_FVBNJ_G0004085	antisense lncRNA gene	Chr5:110816232-110816747 (+)
LP/J	MGP_LPJ_G0004146	antisense lncRNA gene	Chr5:117096746-117097261 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004074	antisense lncRNA gene	Chr5:130123755-130124270 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004256	antisense lncRNA gene	Chr5:114970022-114970537 (+)
PWK/PhJ	MGP_PWKPhJ_G0003974	antisense lncRNA gene	Chr5:110651442-110651957 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003918	antisense lncRNA gene	Chr5:112508520-112509035 (+)
WSB/EiJ	MGP_WSBEiJ_G0004057	antisense lncRNA gene	Chr5:115531449-115531964 (+)

Homology

• Gene Tree
  Gm17122
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm17122
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000090458 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090458	Ensembl Gene Model | MGI Sequence Detail	516	C57BL/6J
transcript	ENSMUST00000166047	Ensembl | MGI Sequence Detail	372	Not Applicable

References

• Summaries
  All 7

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm17122:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48038	Chr5:113980205-113980214 (+)	-452 bp