Gm17207 Gene Detail

Summary

• Symbol
  Gm17207
• Name
  predicted gene 17207

• Feature Type
  lncRNA gene
• IDs
  MGI:4938034
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr5:73367499-73369986 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 38.44 cM

Strain
Comparison

• SNPs within 2kb
  206 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4938034	lncRNA gene	Chr5:73367499-73369986 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0037034	sense intronic lncRNA gene	Chr5:73200298-73202785 (-)
A/J	MGP_AJ_G0037022	sense intronic lncRNA gene	Chr5:70459768-70462255 (-)
AKR/J	MGP_AKRJ_G0036970	sense intronic lncRNA gene	Chr5:72740316-72742803 (-)
BALB/cJ	MGP_BALBcJ_G0037013	sense intronic lncRNA gene	Chr5:71177429-71179916 (-)
C3H/HeJ	MGP_C3HHeJ_G0036700	sense intronic lncRNA gene	Chr5:73142392-73144881 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037526	sense intronic lncRNA gene	Chr5:76209375-76211862 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034577	sense intronic lncRNA gene	Chr5:66155150-66157662 (-)
CAST/EiJ	MGP_CASTEiJ_G0035888	sense intronic lncRNA gene	Chr5:72198151-72200648 (-)
CBA/J	MGP_CBAJ_G0036675	sense intronic lncRNA gene	Chr5:78691287-78693776 (-)
DBA/2J	MGP_DBA2J_G0036850	sense intronic lncRNA gene	Chr5:70538389-70540878 (-)
FVB/NJ	MGP_FVBNJ_G0036800	sense intronic lncRNA gene	Chr5:69676025-69678512 (-)
LP/J	MGP_LPJ_G0036897	sense intronic lncRNA gene	Chr5:73637949-73640436 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036807	sense intronic lncRNA gene	Chr5:81993629-81996118 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037643	sense intronic lncRNA gene	Chr5:72287718-72290205 (-)
PWK/PhJ	MGP_PWKPhJ_G0035580	sense intronic lncRNA gene	Chr5:69500232-69502705 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035389	sense intronic lncRNA gene	Chr5:71632718-71635231 (-)
WSB/EiJ	MGP_WSBEiJ_G0036088	sense intronic lncRNA gene	Chr5:72573718-72576205 (-)

Homology

• Gene Tree
  Gm17207
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  17 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Gm17207
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000090561 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090561	Ensembl Gene Model | MGI Sequence Detail	2488	C57BL/6J
transcript	ENSMUST00000168686	Ensembl | MGI Sequence Detail	645	Not Applicable

References

• Summaries
  All 19

  Phenotypes 17
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for Gm17207:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr51360	Chr5:73369981-73369989 (-)	1 bp
Tssr51359	Chr5:73369949-73369965 (-)	29 bp
Tssr51358	Chr5:73369910-73369948 (-)	57 bp