Mir5098 Gene Detail

Summary

• Symbol
  Mir5098
• Name
  microRNA 5098
• Synonyms
  mmu-mir-5098

• Feature Type
  miRNA gene
• IDs
  MGI:4950415
  NCBI Gene: 100628577
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:77420604-77420685 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 41.61 cM

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4950415	miRNA gene	Chr5:77420604-77420685 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0008825	miRNA gene	Chr5:77532278-77532359 (+)
A/J	MGP_AJ_G0008809	miRNA gene	Chr5:74544458-74544539 (+)
AKR/J	MGP_AKRJ_G0008801	miRNA gene	Chr5:76992723-76992804 (+)
BALB/cJ	MGP_BALBcJ_G0008797	miRNA gene	Chr5:75282956-75283037 (+)
C3H/HeJ	MGP_C3HHeJ_G0008738	miRNA gene	Chr5:77353310-77353391 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0009025	miRNA gene	Chr5:80619767-80619848 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007956	miRNA gene	Chr5:70167968-70168054 (+)
CAST/EiJ	MGP_CASTEiJ_G0008579	miRNA gene	Chr5:76579897-76579988 (+)
CBA/J	MGP_CBAJ_G0008704	miRNA gene	Chr5:83298815-83298896 (+)
DBA/2J	MGP_DBA2J_G0008735	miRNA gene	Chr5:74602120-74602201 (+)
FVB/NJ	MGP_FVBNJ_G0008755	miRNA gene	Chr5:73811327-73811408 (+)
LP/J	MGP_LPJ_G0008828	miRNA gene	Chr5:77945657-77945738 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0008719	miRNA gene	Chr5:86389434-86389515 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0009004	miRNA gene	Chr5:76541688-76541769 (+)
PWK/PhJ	MGP_PWKPhJ_G0008509	miRNA gene	Chr5:73626193-73626289 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0008357	miRNA gene	Chr5:75920867-75920947 (+)
WSB/EiJ	MGP_WSBEiJ_G0008677	miRNA gene	Chr5:76866986-76867077 (+)

Homology

• Gene Tree
  Mir5098
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Mir5098
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000093061 (Evidence)
• NCBI Gene
  100628577

Representative Sequences			Length	Strain/Species
genomic	100628577	NCBI Gene Model | MGI Sequence Detail	82	C57BL/6J
transcript	NR_039557	RefSeq | MGI Sequence Detail	82	ZRU/MplStud

Other Database
Links

miRBase

MI0018006

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4