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Mir5099 Gene Detail
Summary
  • Symbol
    Mir5099
  • Name
    microRNA 5099
  • Synonyms
    mmu-mir-5099
  • Feature Type
    miRNA gene
  • IDs
    MGI:4950417
    NCBI Gene: 100628578
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:36866204-36866277 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 16.84 cM
Strain
Comparison
more
  • SNPs within 2kb
    151 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4950417
 miRNA gene Chr12:36866204-36866277 (+)
129S1/SvImJ MGP_129S1SvImJ_G0007918
 miRNA gene Chr12:35065330-35065403 (+)
A/J MGP_AJ_G0007911
 miRNA gene Chr12:33968993-33969066 (+)
AKR/J MGP_AKRJ_G0007887
 miRNA gene Chr12:35007104-35007177 (+)
BALB/cJ MGP_BALBcJ_G0007891
 miRNA gene Chr12:34173192-34173265 (+)
C3H/HeJ MGP_C3HHeJ_G0007836
 miRNA gene Chr12:34957216-34957289 (+)
C57BL/6NJ MGP_C57BL6NJ_G0008072
 miRNA gene Chr12:36071636-36071709 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0007729
 miRNA gene Chr12:30009109-30009182 (+)
CBA/J MGP_CBAJ_G0007808
 miRNA gene Chr12:37249707-37249780 (+)
DBA/2J MGP_DBA2J_G0007844
 miRNA gene Chr12:33811563-33811636 (+)
FVB/NJ MGP_FVBNJ_G0007862
 miRNA gene Chr12:33525256-33525329 (+)
LP/J MGP_LPJ_G0007922
 miRNA gene Chr12:35154249-35154322 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0007833
 miRNA gene Chr12:36940804-36940877 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0008066
 miRNA gene Chr12:34525374-34525447 (+)
PWK/PhJ MGP_PWKPhJ_G0007654
 miRNA gene Chr12:28498127-28498200 (+)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0007798
 miRNA gene Chr12:34806884-34806957 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    20
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100628578 NCBI Gene Model | MGI Sequence Detail 74 C57BL/6J ±  kb
transcript NR_039558 RefSeq | MGI Sequence Detail 74 ZRU/MplStud  
For the selected sequence
Other Database
Links
less
miRBase MI0018007
References
more
  • Summaries
    All 5
    Gene Ontology 1
  • Earliest
    J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4
  • Latest
    J:200238 Polikepahad S, et al., Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2. Nucleic Acids Res. 2013 Jan;41(2):1164-77
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory