Mir5122 Gene Detail

Summary

• Symbol
  Mir5122
• Name
  microRNA 5122
• Synonyms
  mmu-mir-5122

• Feature Type
  miRNA gene
• IDs
  MGI:4950447
  NCBI Gene: 100628620
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:133097087-133097175 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 66.25 cM

Strain
Comparison

• SNPs within 2kb
  74 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4950447	miRNA gene	Chr4:133097087-133097175 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0008764	miRNA gene	Chr4:135606365-135606453 (+)
A/J	MGP_AJ_G0008748	miRNA gene	Chr4:129943087-129943175 (+)
AKR/J	MGP_AKRJ_G0008740	miRNA gene	Chr4:133632274-133632362 (+)
BALB/cJ	MGP_BALBcJ_G0008739	miRNA gene	Chr4:130564454-130564542 (+)
C3H/HeJ	MGP_C3HHeJ_G0008679	miRNA gene	Chr4:133880966-133881054 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0008957	miRNA gene	Chr4:140494142-140494230 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007904	miRNA gene	Chr4:123018152-123018240 (+)
CAST/EiJ	MGP_CASTEiJ_G0008520	miRNA gene	Chr4:131991381-131991469 (+)
CBA/J	MGP_CBAJ_G0008645	miRNA gene	Chr4:144154530-144154618 (+)
DBA/2J	MGP_DBA2J_G0008675	miRNA gene	Chr4:130360858-130360946 (+)
FVB/NJ	MGP_FVBNJ_G0008696	miRNA gene	Chr4:129233569-129233657 (+)
LP/J	MGP_LPJ_G0008769	miRNA gene	Chr4:135737569-135737657 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0008661	miRNA gene	Chr4:148678277-148678365 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0008939	miRNA gene	Chr4:134054180-134054268 (+)
PWK/PhJ	MGP_PWKPhJ_G0008449	miRNA gene	Chr4:127075548-127075636 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0008301	miRNA gene	Chr4:129893784-129893872 (+)
WSB/EiJ	MGP_WSBEiJ_G0008618	miRNA gene	Chr4:134226760-134226848 (+)

Homology

• Gene Tree
  Mir5122
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Mir5122
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000092745 (Evidence)
• NCBI Gene
  100628620

Representative Sequences			Length	Strain/Species
genomic	100628620	NCBI Gene Model | MGI Sequence Detail	89	C57BL/6J
transcript	NR_039582	RefSeq | MGI Sequence Detail	89	ZRU/MplStud

Other Database
Links

miRBase

MI0018031

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4

TSS for Mir5122:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39477	Chr4:133097076-133097091 (+)	-3 bp