Mir5124a Gene Detail

Summary

• Symbol
  Mir5124a
• Name
  microRNA 5124a
• Synonyms
  mmu-mir-5124, mmu-mir-5124a

• Feature Type
  miRNA gene
• IDs
  MGI:4950449
  NCBI Gene: 100628630
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:41019267-41019338 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 20.13 cM

Strain
Comparison

• SNPs within 2kb
  101 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4950449	miRNA gene	Chr13:41019267-41019338 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0008061	miRNA gene	Chr13:39331673-39331744 (+)
A/J	MGP_AJ_G0008050	miRNA gene	Chr13:38025515-38025586 (+)
AKR/J	MGP_AKRJ_G0008026	miRNA gene	Chr13:39056375-39056446 (+)
BALB/cJ	MGP_BALBcJ_G0008032	miRNA gene	Chr13:38209839-38209910 (+)
C3H/HeJ	MGP_C3HHeJ_G0007974	miRNA gene	Chr13:38936619-38936690 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0008213	miRNA gene	Chr13:40583752-40583823 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0007859	miRNA gene	Chr13:38704432-38704503 (+)
CBA/J	MGP_CBAJ_G0007945	miRNA gene	Chr13:42312382-42312453 (+)
DBA/2J	MGP_DBA2J_G0007978	miRNA gene	Chr13:37600031-37600102 (+)
FVB/NJ	MGP_FVBNJ_G0008001	miRNA gene	Chr13:37087864-37087935 (+)
LP/J	MGP_LPJ_G0008061	miRNA gene	Chr13:39573714-39573785 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007971	miRNA gene	Chr13:42299233-42299304 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0008215	miRNA gene	Chr13:38700146-38700217 (+)
PWK/PhJ	MGP_PWKPhJ_G0007779	miRNA gene	Chr13:37671494-37671565 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007676	miRNA gene	Chr13:37320406-37320477 (+)
WSB/EiJ	MGP_WSBEiJ_G0007930	miRNA gene	Chr13:39010743-39010814 (+)

Homology

• Gene Tree
  Mir5124a
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Mir5124a
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000093269 (Evidence)
• NCBI Gene
  100628630

Representative Sequences			Length	Strain/Species
genomic	100628630	NCBI Gene Model | MGI Sequence Detail	72	C57BL/6J
transcript	NR_039585	RefSeq | MGI Sequence Detail	72	ZRU/MplStud

Other Database
Links

miRBase

MI0018035

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4